Q38840 (AGL17_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Agamous-like MADS-box protein AGL17

Gene names

Name:	AGL17
Ordered Locus Names:	At2g22630
ORF Names:	T9I22.7

Organism

Arabidopsis thaliana (Mouse-ear cress) [Reference proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	227 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	Probable transcription factor.
Subcellular location	Nucleus By similarity.
Tissue specificity	Preferentially expressed in roots.
Sequence similarities	Contains 1 K-box domain. Contains 1 MADS-box domain.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Ligand	DNA-binding
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	positive regulation of long-day photoperiodism, flowering Inferred from mutant phenotype PubMed 18363787. Source: TAIR transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from sequence or structural similarity PubMed 11118137PubMed 12837945Ref.3. Source: TAIR
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 227	227	Agamous-like MADS-box protein AGL17		PRO_0000199476
Regions
	Domain	3 – 57	55	MADS-box
	Domain	86 – 176	91	K-box
Experimental info
	Sequence conflict	201 – 227	27	AVYES…TSSNS → QFMNPMHRLGCS in AAC49084. Ref.3

Sequences

	Sequence		Length	Mass (Da)
	Q38840 [UniParc]. Last modified January 11, 2001. Version 2. Checksum: 2C02283974D76594	FASTA	227	26,314
	10 20 30 40 50 60 MGRGKIVIQK IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVCLIIFSN TDKLYDFASS 70 80 90 100 110 120 SVKSTIERFN TAKMEEQELM NPASEVKFWQ REAETLRQEL HSLQENYRQL TGVELNGLSV 130 140 150 160 170 180 KELQNIESQL EMSLRGIRMK REQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL 190 200 210 220 YKKAYGTSNT NGLGHHELVD AVYESHAQVR LQLSQPEQSH YKTSSNS

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana." Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A. , Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C. Nature 402:761-768(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[3]	"Diverse roles for MADS box genes in Arabidopsis development." Rounsley S.D., Ditta G.S., Yanofsky M.F. Plant Cell 7:1259-1269(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 8-227. Strain: cv. Landsberg erecta. Tissue: Root.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC006340 Genomic DNA. Translation: AAD15571.1. CP002685 Genomic DNA. Translation: AEC07331.1. U20186 mRNA. Translation: AAC49084.1.
IPI	IPI00531185.
PIR	H84614.
RefSeq	NP_179848.1. NM_127828.2.
UniGene	At.39413.
3D structure databases
ProteinModelPortal	Q38840.
SMR	Q38840. Positions 2-69.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q38840. 4 interactions.
Proteomic databases
PRIDE	Q38840.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT2G22630.1; AT2G22630.1; AT2G22630.
GeneID	816794.
KEGG	ath:AT2G22630.
Organism-specific databases
GeneFarm	3517. 358.
TAIR	At2g22630.
Phylogenomic databases
eggNOG	COG5068.
HOGENOM	HOG000155301.
InParanoid	Q38840.
OMA	GHHELVD.
PhylomeDB	Q38840.
ProtClustDB	CLSN2683748.
Gene expression databases
ArrayExpress	Q38840.
Genevestigator	Q38840.
GermOnline	AT2G22630. Arabidopsis thaliana.
Family and domain databases
InterPro	IPR002487. TF_Kbox. IPR002100. TF_MADSbox. [Graphical view]
Pfam	PF01486. K-box. 1 hit. PF00319. SRF-TF. 1 hit. [Graphical view]
PRINTS	PR00404. MADSDOMAIN.
SMART	SM00432. MADS. 1 hit. [Graphical view]
SUPFAM	SSF55455. TF_MADSbox. 1 hit.
PROSITE	PS51297. K_BOX. 1 hit. PS00350. MADS_BOX_1. 1 hit. PS50066. MADS_BOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

AGL17_ARATH

Accession

Primary (citable) accession number: Q38840
Secondary accession number(s): Q9ZQ50

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 11, 2001
Last sequence update:	January 11, 2001
Last modified:	May 1, 2013
This is version 105 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program