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Protein

Agamous-like MADS-box protein AGL17

Gene

AGL17

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Probable transcription factor.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL17
Gene namesi
Name:AGL17
Ordered Locus Names:At2g22630
ORF Names:T9I22.7
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G22630
TAIRilocus:2066050 AT2G22630

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001994761 – 227Agamous-like MADS-box protein AGL17Add BLAST227

Proteomic databases

PaxDbiQ38840
PRIDEiQ38840

Expressioni

Tissue specificityi

Preferentially expressed in roots.

Gene expression databases

ExpressionAtlasiQ38840 differential
GenevisibleiQ38840 AT

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
AGL21Q9SZJ64EBI-622087,EBI-621986

GO - Molecular functioni

Protein-protein interaction databases

BioGridi2147, 4 interactors
IntActiQ38840, 10 interactors
STRINGi3702.AT2G22630.1

Structurei

3D structure databases

ProteinModelPortaliQ38840
SMRiQ38840
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 57MADS-boxPROSITE-ProRule annotationAdd BLAST55
Domaini86 – 176K-boxPROSITE-ProRule annotationAdd BLAST91

Phylogenomic databases

eggNOGiKOG0014 Eukaryota
COG5068 LUCA
HOGENOMiHOG000155301
InParanoidiQ38840
OMAiGHHELVD
OrthoDBiEOG09360MHP
PhylomeDBiQ38840

Family and domain databases

CDDicd00265 MADS_MEF2_like, 1 hit
Gene3Di3.40.1810.10, 1 hit
InterProiView protein in InterPro
IPR033896 MADS_MEF2-like
IPR002487 TF_Kbox
IPR002100 TF_MADSbox
IPR036879 TF_MADSbox_sf
PfamiView protein in Pfam
PF01486 K-box, 1 hit
PF00319 SRF-TF, 1 hit
PRINTSiPR00404 MADSDOMAIN
SMARTiView protein in SMART
SM00432 MADS, 1 hit
SUPFAMiSSF55455 SSF55455, 1 hit
PROSITEiView protein in PROSITE
PS51297 K_BOX, 1 hit
PS00350 MADS_BOX_1, 1 hit
PS50066 MADS_BOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q38840-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRGKIVIQK IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVCLIIFSN
60 70 80 90 100
TDKLYDFASS SVKSTIERFN TAKMEEQELM NPASEVKFWQ REAETLRQEL
110 120 130 140 150
HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK
160 170 180 190 200
ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
210 220
AVYESHAQVR LQLSQPEQSH YKTSSNS
Length:227
Mass (Da):26,314
Last modified:January 11, 2001 - v2
Checksum:i2C02283974D76594
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti201 – 227AVYES…TSSNS → QFMNPMHRLGCS in AAC49084 (PubMed:7549482).CuratedAdd BLAST27

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006340 Genomic DNA Translation: AAD15571.1
CP002685 Genomic DNA Translation: AEC07331.1
CP002685 Genomic DNA Translation: ANM62286.1
U20186 mRNA Translation: AAC49084.1
PIRiH84614
RefSeqiNP_001324454.1, NM_001335805.1
NP_179848.1, NM_127828.3
UniGeneiAt.39413

Genome annotation databases

EnsemblPlantsiAT2G22630.1; AT2G22630.1; AT2G22630
AT2G22630.2; AT2G22630.2; AT2G22630
GeneIDi816794
GrameneiAT2G22630.1; AT2G22630.1; AT2G22630
AT2G22630.2; AT2G22630.2; AT2G22630
KEGGiath:AT2G22630

Similar proteinsi

Entry informationi

Entry nameiAGL17_ARATH
AccessioniPrimary (citable) accession number: Q38840
Secondary accession number(s): Q9ZQ50
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 11, 2001
Last sequence update: January 11, 2001
Last modified: May 23, 2018
This is version 140 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names

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