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Protein

Agamous-like MADS-box protein AGL17

Gene

AGL17

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Probable transcription factor.

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • positive regulation of long-day photoperiodism, flowering Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL17
Gene namesi
Name:AGL17
Ordered Locus Names:At2g22630
ORF Names:T9I22.7
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G22630.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 227227Agamous-like MADS-box protein AGL17PRO_0000199476Add
BLAST

Proteomic databases

PaxDbiQ38840.
PRIDEiQ38840.

Expressioni

Tissue specificityi

Preferentially expressed in roots.

Gene expression databases

ExpressionAtlasiQ38840. baseline and differential.
GenevisibleiQ38840. AT.

Interactioni

Protein-protein interaction databases

BioGridi2147. 4 interactions.
IntActiQ38840. 4 interactions.
STRINGi3702.AT2G22630.1.

Structurei

3D structure databases

ProteinModelPortaliQ38840.
SMRiQ38840. Positions 2-69.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 5755MADS-boxPROSITE-ProRule annotationAdd
BLAST
Domaini86 – 17691K-boxPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 K-box domain.PROSITE-ProRule annotation
Contains 1 MADS-box domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000155301.
InParanoidiQ38840.
OMAiGHHELVD.
OrthoDBiEOG09360MHP.
PhylomeDBiQ38840.

Family and domain databases

InterProiIPR002487. TF_Kbox.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF01486. K-box. 1 hit.
PF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS51297. K_BOX. 1 hit.
PS00350. MADS_BOX_1. 1 hit.
PS50066. MADS_BOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q38840-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRGKIVIQK IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVCLIIFSN
60 70 80 90 100
TDKLYDFASS SVKSTIERFN TAKMEEQELM NPASEVKFWQ REAETLRQEL
110 120 130 140 150
HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK
160 170 180 190 200
ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
210 220
AVYESHAQVR LQLSQPEQSH YKTSSNS
Length:227
Mass (Da):26,314
Last modified:January 11, 2001 - v2
Checksum:i2C02283974D76594
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti201 – 22727AVYES…TSSNS → QFMNPMHRLGCS in AAC49084 (PubMed:7549482).CuratedAdd
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006340 Genomic DNA. Translation: AAD15571.1.
CP002685 Genomic DNA. Translation: AEC07331.1.
U20186 mRNA. Translation: AAC49084.1.
PIRiH84614.
RefSeqiNP_179848.1. NM_127828.2.
UniGeneiAt.39413.

Genome annotation databases

EnsemblPlantsiAT2G22630.1; AT2G22630.1; AT2G22630.
GeneIDi816794.
GrameneiAT2G22630.1; AT2G22630.1; AT2G22630.
KEGGiath:AT2G22630.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006340 Genomic DNA. Translation: AAD15571.1.
CP002685 Genomic DNA. Translation: AEC07331.1.
U20186 mRNA. Translation: AAC49084.1.
PIRiH84614.
RefSeqiNP_179848.1. NM_127828.2.
UniGeneiAt.39413.

3D structure databases

ProteinModelPortaliQ38840.
SMRiQ38840. Positions 2-69.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi2147. 4 interactions.
IntActiQ38840. 4 interactions.
STRINGi3702.AT2G22630.1.

Proteomic databases

PaxDbiQ38840.
PRIDEiQ38840.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G22630.1; AT2G22630.1; AT2G22630.
GeneIDi816794.
GrameneiAT2G22630.1; AT2G22630.1; AT2G22630.
KEGGiath:AT2G22630.

Organism-specific databases

TAIRiAT2G22630.

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000155301.
InParanoidiQ38840.
OMAiGHHELVD.
OrthoDBiEOG09360MHP.
PhylomeDBiQ38840.

Miscellaneous databases

PROiQ38840.

Gene expression databases

ExpressionAtlasiQ38840. baseline and differential.
GenevisibleiQ38840. AT.

Family and domain databases

InterProiIPR002487. TF_Kbox.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF01486. K-box. 1 hit.
PF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS51297. K_BOX. 1 hit.
PS00350. MADS_BOX_1. 1 hit.
PS50066. MADS_BOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiAGL17_ARATH
AccessioniPrimary (citable) accession number: Q38840
Secondary accession number(s): Q9ZQ50
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 11, 2001
Last sequence update: January 11, 2001
Last modified: September 7, 2016
This is version 125 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.