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Protein

Agamous-like MADS-box protein AGL13

Gene

AGL13

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Probable transcription factor.

GO - Molecular functioni

GO - Biological processi

  • plant ovule development Source: TAIR
  • pollen development Source: TAIR
  • positive regulation of transcription by RNA polymerase II Source: InterPro
  • regulation of gene expression Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL13
Gene namesi
Name:AGL13
Ordered Locus Names:At3g61120
ORF Names:T20K12.20
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G61120
TAIRilocus:2098826 AT3G61120

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001994721 – 244Agamous-like MADS-box protein AGL13Add BLAST244

Proteomic databases

PaxDbiQ38837

Expressioni

Gene expression databases

ExpressionAtlasiQ38837 baseline and differential
GenevisibleiQ38837 AT

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi10598, 6 interactors
IntActiQ38837, 5 interactors
STRINGi3702.AT3G61120.1

Structurei

3D structure databases

ProteinModelPortaliQ38837
SMRiQ38837
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 57MADS-boxPROSITE-ProRule annotationAdd BLAST55
Domaini85 – 175K-boxPROSITE-ProRule annotationAdd BLAST91

Phylogenomic databases

eggNOGiKOG0014 Eukaryota
COG5068 LUCA
HOGENOMiHOG000155301
InParanoidiQ38837
OMAiRCNINIL
OrthoDBiEOG09360JNU
PhylomeDBiQ38837

Family and domain databases

CDDicd00265 MADS_MEF2_like, 1 hit
Gene3Di3.40.1810.10, 1 hit
InterProiView protein in InterPro
IPR033896 MADS_MEF2-like
IPR002487 TF_Kbox
IPR002100 TF_MADSbox
IPR036879 TF_MADSbox_sf
PfamiView protein in Pfam
PF01486 K-box, 1 hit
PF00319 SRF-TF, 1 hit
PRINTSiPR00404 MADSDOMAIN
SMARTiView protein in SMART
SM00432 MADS, 1 hit
SUPFAMiSSF55455 SSF55455, 1 hit
PROSITEiView protein in PROSITE
PS51297 K_BOX, 1 hit
PS00350 MADS_BOX_1, 1 hit
PS50066 MADS_BOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q38837-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRGKVEVKR IENKITRQVT FSKRKSGLLK KAYELSVLCD AEVSLIIFST
60 70 80 90 100
GGKLYEFSNV GVGRTIERYY RCKDNLLDND TLEDTQGLRQ EVTKLKCKYE
110 120 130 140 150
SLLRTHRNLV GEDLEGMSIK ELQTLERQLE GALSATRKQK TQVMMEQMEE
160 170 180 190 200
LRRKERELGD INNKLKLETE DHDFKGFQDL LLNPVLTAGC STDFSLQSTH
210 220 230 240
QNYISDCNLG YFLQIGFQQH YEQGEGSSVT KSNARSDAET NFVQ
Length:244
Mass (Da):27,968
Last modified:January 11, 2001 - v2
Checksum:i7480EF3F5BBA1499
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti213 – 244LQIGF…TNFVQ → YRLGFNNTMSKVKDLR in AAC49081 (PubMed:7549482).CuratedAdd BLAST32

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U20183 mRNA Translation: AAC49081.1
AL137898 Genomic DNA Translation: CAB71042.1
CP002686 Genomic DNA Translation: AEE80158.1
PIRiT47904
RefSeqiNP_191671.1, NM_115976.2

Genome annotation databases

EnsemblPlantsiAT3G61120.1; AT3G61120.1; AT3G61120
GeneIDi825284
GrameneiAT3G61120.1; AT3G61120.1; AT3G61120
KEGGiath:AT3G61120

Similar proteinsi

Entry informationi

Entry nameiAGL13_ARATH
AccessioniPrimary (citable) accession number: Q38837
Secondary accession number(s): Q9M2F0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 11, 2001
Last sequence update: January 11, 2001
Last modified: April 25, 2018
This is version 132 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health