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Protein

Agamous-like MADS-box protein AGL13

Gene

AGL13

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Probable transcription factor.

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • plant ovule development Source: TAIR
  • pollen development Source: TAIR
  • regulation of gene expression Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL13
Gene namesi
Name:AGL13
Ordered Locus Names:At3g61120
ORF Names:T20K12.20
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G61120.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 244244Agamous-like MADS-box protein AGL13PRO_0000199472Add
BLAST

Proteomic databases

PaxDbiQ38837.
PRIDEiQ38837.

Expressioni

Gene expression databases

GenevisibleiQ38837. AT.

Interactioni

Protein-protein interaction databases

BioGridi10598. 6 interactions.
IntActiQ38837. 5 interactions.
STRINGi3702.AT3G61120.1.

Structurei

3D structure databases

ProteinModelPortaliQ38837.
SMRiQ38837. Positions 3-58, 89-167.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 5755MADS-boxPROSITE-ProRule annotationAdd
BLAST
Domaini85 – 17591K-boxPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 K-box domain.PROSITE-ProRule annotation
Contains 1 MADS-box domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000155301.
InParanoidiQ38837.
OMAiLETEDHD.
OrthoDBiEOG09360JNU.
PhylomeDBiQ38837.

Family and domain databases

InterProiIPR002487. TF_Kbox.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF01486. K-box. 1 hit.
PF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS51297. K_BOX. 1 hit.
PS00350. MADS_BOX_1. 1 hit.
PS50066. MADS_BOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q38837-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRGKVEVKR IENKITRQVT FSKRKSGLLK KAYELSVLCD AEVSLIIFST
60 70 80 90 100
GGKLYEFSNV GVGRTIERYY RCKDNLLDND TLEDTQGLRQ EVTKLKCKYE
110 120 130 140 150
SLLRTHRNLV GEDLEGMSIK ELQTLERQLE GALSATRKQK TQVMMEQMEE
160 170 180 190 200
LRRKERELGD INNKLKLETE DHDFKGFQDL LLNPVLTAGC STDFSLQSTH
210 220 230 240
QNYISDCNLG YFLQIGFQQH YEQGEGSSVT KSNARSDAET NFVQ
Length:244
Mass (Da):27,968
Last modified:January 11, 2001 - v2
Checksum:i7480EF3F5BBA1499
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti213 – 24432LQIGF…TNFVQ → YRLGFNNTMSKVKDLR in AAC49081 (PubMed:7549482).CuratedAdd
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U20183 mRNA. Translation: AAC49081.1.
AL137898 Genomic DNA. Translation: CAB71042.1.
CP002686 Genomic DNA. Translation: AEE80158.1.
PIRiT47904.
RefSeqiNP_191671.1. NM_115976.1.
UniGeneiAt.968.

Genome annotation databases

EnsemblPlantsiAT3G61120.1; AT3G61120.1; AT3G61120.
GeneIDi825284.
GrameneiAT3G61120.1; AT3G61120.1; AT3G61120.
KEGGiath:AT3G61120.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U20183 mRNA. Translation: AAC49081.1.
AL137898 Genomic DNA. Translation: CAB71042.1.
CP002686 Genomic DNA. Translation: AEE80158.1.
PIRiT47904.
RefSeqiNP_191671.1. NM_115976.1.
UniGeneiAt.968.

3D structure databases

ProteinModelPortaliQ38837.
SMRiQ38837. Positions 3-58, 89-167.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi10598. 6 interactions.
IntActiQ38837. 5 interactions.
STRINGi3702.AT3G61120.1.

Proteomic databases

PaxDbiQ38837.
PRIDEiQ38837.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G61120.1; AT3G61120.1; AT3G61120.
GeneIDi825284.
GrameneiAT3G61120.1; AT3G61120.1; AT3G61120.
KEGGiath:AT3G61120.

Organism-specific databases

TAIRiAT3G61120.

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000155301.
InParanoidiQ38837.
OMAiLETEDHD.
OrthoDBiEOG09360JNU.
PhylomeDBiQ38837.

Miscellaneous databases

PROiQ38837.

Gene expression databases

GenevisibleiQ38837. AT.

Family and domain databases

InterProiIPR002487. TF_Kbox.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF01486. K-box. 1 hit.
PF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS51297. K_BOX. 1 hit.
PS00350. MADS_BOX_1. 1 hit.
PS50066. MADS_BOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiAGL13_ARATH
AccessioniPrimary (citable) accession number: Q38837
Secondary accession number(s): Q9M2F0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 11, 2001
Last sequence update: January 11, 2001
Last modified: September 7, 2016
This is version 119 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.