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Protein

Agamous-like MADS-box protein AGL11

Gene

AGL11

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Probable transcription factor.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL11
Alternative name(s):
Protein SEEDSTICK
Gene namesi
Name:AGL11
Synonyms:STK
Ordered Locus Names:At4g09960
ORF Names:T5L19.90
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G09960.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001994701 – 230Agamous-like MADS-box protein AGL11Add BLAST230

Proteomic databases

PaxDbiQ38836.

Expressioni

Gene expression databases

ExpressionAtlasiQ38836. baseline and differential.
GenevisibleiQ38836. AT.

Interactioni

Subunit structurei

Interacts with AGL15 and AGL16.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
SEP3O224563EBI-592343,EBI-592020

Protein-protein interaction databases

BioGridi11885. 7 interactors.
IntActiQ38836. 11 interactors.
STRINGi3702.AT4G09960.3.

Structurei

3D structure databases

ProteinModelPortaliQ38836.
SMRiQ38836.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 57MADS-boxPROSITE-ProRule annotationAdd BLAST55
Domaini87 – 177K-boxPROSITE-ProRule annotationAdd BLAST91

Sequence similaritiesi

Contains 1 K-box domain.PROSITE-ProRule annotation
Contains 1 MADS-box domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000155301.
InParanoidiQ38836.
PhylomeDBiQ38836.

Family and domain databases

CDDicd00265. MADS_MEF2_like. 1 hit.
InterProiIPR033896. MADS_MEF2-like.
IPR002487. TF_Kbox.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF01486. K-box. 1 hit.
PF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS51297. K_BOX. 1 hit.
PS00350. MADS_BOX_1. 1 hit.
PS50066. MADS_BOX_2. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q38836-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST
60 70 80 90 100
RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ
110 120 130 140 150
IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI
160 170 180 190 200
ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN
210 220 230
YFAHSIMTAG SGSGNGGSYS DPDKKILHLG
Length:230
Mass (Da):26,184
Last modified:November 1, 1996 - v1
Checksum:i336C383355E6CB51
GO
Isoform 2 (identifier: Q38836-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     143-156: Missing.

Note: May be due to exon skipping.
Show »
Length:216
Mass (Da):24,510
Checksum:iA96927C79749615E
GO

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_008892143 – 156Missing in isoform 2. 2 PublicationsAdd BLAST14

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U20182 mRNA. Translation: AAC49080.1.
AL049481 Genomic DNA. Translation: CAB39620.1.
AL161516 Genomic DNA. Translation: CAB78119.1.
CP002687 Genomic DNA. Translation: AEE82816.1.
CP002687 Genomic DNA. Translation: AEE82817.1.
AY065289 mRNA. Translation: AAL38765.1.
AY133738 mRNA. Translation: AAM91672.1.
AY087201 mRNA. Translation: AAM64757.1.
PIRiT04000.
RefSeqiNP_192734.1. NM_117064.7. [Q38836-1]
NP_849351.1. NM_179020.5. [Q38836-2]
UniGeneiAt.2918.

Genome annotation databases

EnsemblPlantsiAT4G09960.1; AT4G09960.1; AT4G09960. [Q38836-1]
GeneIDi826586.
GrameneiAT4G09960.1; AT4G09960.1; AT4G09960.
KEGGiath:AT4G09960.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U20182 mRNA. Translation: AAC49080.1.
AL049481 Genomic DNA. Translation: CAB39620.1.
AL161516 Genomic DNA. Translation: CAB78119.1.
CP002687 Genomic DNA. Translation: AEE82816.1.
CP002687 Genomic DNA. Translation: AEE82817.1.
AY065289 mRNA. Translation: AAL38765.1.
AY133738 mRNA. Translation: AAM91672.1.
AY087201 mRNA. Translation: AAM64757.1.
PIRiT04000.
RefSeqiNP_192734.1. NM_117064.7. [Q38836-1]
NP_849351.1. NM_179020.5. [Q38836-2]
UniGeneiAt.2918.

3D structure databases

ProteinModelPortaliQ38836.
SMRiQ38836.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi11885. 7 interactors.
IntActiQ38836. 11 interactors.
STRINGi3702.AT4G09960.3.

Proteomic databases

PaxDbiQ38836.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G09960.1; AT4G09960.1; AT4G09960. [Q38836-1]
GeneIDi826586.
GrameneiAT4G09960.1; AT4G09960.1; AT4G09960.
KEGGiath:AT4G09960.

Organism-specific databases

TAIRiAT4G09960.

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000155301.
InParanoidiQ38836.
PhylomeDBiQ38836.

Miscellaneous databases

PROiQ38836.

Gene expression databases

ExpressionAtlasiQ38836. baseline and differential.
GenevisibleiQ38836. AT.

Family and domain databases

CDDicd00265. MADS_MEF2_like. 1 hit.
InterProiIPR033896. MADS_MEF2-like.
IPR002487. TF_Kbox.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF01486. K-box. 1 hit.
PF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS51297. K_BOX. 1 hit.
PS00350. MADS_BOX_1. 1 hit.
PS50066. MADS_BOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiAGL11_ARATH
AccessioniPrimary (citable) accession number: Q38836
Secondary accession number(s): Q8VZ36
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 11, 2001
Last sequence update: November 1, 1996
Last modified: November 30, 2016
This is version 143 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.