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Protein

Agamous-like MADS-box protein AGL11

Gene

AGL11

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Probable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531).Curated1 Publication

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDevelopmental protein, DNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL11
Alternative name(s):
Protein SEEDSTICK
Gene namesi
Name:AGL11
Synonyms:STK
Ordered Locus Names:At4g09960
ORF Names:T5L19.90
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G09960

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001994701 – 230Agamous-like MADS-box protein AGL11Add BLAST230

Proteomic databases

PaxDbiQ38836

Expressioni

Gene expression databases

ExpressionAtlasiQ38836 differential
GenevisibleiQ38836 AT

Interactioni

Subunit structurei

Interacts with AGL15 and AGL16.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
SEP3O224563EBI-592343,EBI-592020

GO - Molecular functioni

Protein-protein interaction databases

BioGridi11885, 7 interactors
IntActiQ38836, 11 interactors
STRINGi3702.AT4G09960.3

Structurei

3D structure databases

ProteinModelPortaliQ38836
SMRiQ38836
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 57MADS-boxPROSITE-ProRule annotationAdd BLAST55
Domaini87 – 177K-boxPROSITE-ProRule annotationAdd BLAST91

Phylogenomic databases

eggNOGiKOG0014 Eukaryota
COG5068 LUCA
HOGENOMiHOG000155301
InParanoidiQ38836
PhylomeDBiQ38836

Family and domain databases

CDDicd00265 MADS_MEF2_like, 1 hit
Gene3Di3.40.1810.10, 1 hit
InterProiView protein in InterPro
IPR033896 MADS_MEF2-like
IPR002487 TF_Kbox
IPR002100 TF_MADSbox
IPR036879 TF_MADSbox_sf
PfamiView protein in Pfam
PF01486 K-box, 1 hit
PF00319 SRF-TF, 1 hit
PRINTSiPR00404 MADSDOMAIN
SMARTiView protein in SMART
SM00432 MADS, 1 hit
SUPFAMiSSF55455 SSF55455, 1 hit
PROSITEiView protein in PROSITE
PS51297 K_BOX, 1 hit
PS00350 MADS_BOX_1, 1 hit
PS50066 MADS_BOX_2, 1 hit

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q38836-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST
60 70 80 90 100
RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ
110 120 130 140 150
IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI
160 170 180 190 200
ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN
210 220 230
YFAHSIMTAG SGSGNGGSYS DPDKKILHLG
Length:230
Mass (Da):26,184
Last modified:November 1, 1996 - v1
Checksum:i336C383355E6CB51
GO
Isoform 2 (identifier: Q38836-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     143-156: Missing.

Note: May be due to exon skipping.
Show »
Length:216
Mass (Da):24,510
Checksum:iA96927C79749615E
GO

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_008892143 – 156Missing in isoform 2. 2 PublicationsAdd BLAST14

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U20182 mRNA Translation: AAC49080.1
AL049481 Genomic DNA Translation: CAB39620.1
AL161516 Genomic DNA Translation: CAB78119.1
CP002687 Genomic DNA Translation: AEE82816.1
CP002687 Genomic DNA Translation: AEE82817.1
AY065289 mRNA Translation: AAL38765.1
AY133738 mRNA Translation: AAM91672.1
AY087201 mRNA Translation: AAM64757.1
PIRiT04000
RefSeqiNP_192734.1, NM_117064.7 [Q38836-1]
NP_849351.1, NM_179020.5 [Q38836-2]
UniGeneiAt.2918

Genome annotation databases

EnsemblPlantsiAT4G09960.1; AT4G09960.1; AT4G09960 [Q38836-1]
AT4G09960.2; AT4G09960.2; AT4G09960 [Q38836-2]
AT4G09960.5; AT4G09960.5; AT4G09960
GeneIDi826586
GrameneiAT4G09960.1; AT4G09960.1; AT4G09960 [Q38836-1]
AT4G09960.2; AT4G09960.2; AT4G09960 [Q38836-2]
AT4G09960.5; AT4G09960.5; AT4G09960
KEGGiath:AT4G09960

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiAGL11_ARATH
AccessioniPrimary (citable) accession number: Q38836
Secondary accession number(s): Q8VZ36
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 11, 2001
Last sequence update: November 1, 1996
Last modified: May 23, 2018
This is version 157 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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