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Protein
Submitted name:

Permatin

Gene
N/A
Organism
Avena sativa (Oat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
PermatinImported
OrganismiAvena sativa (Oat)Imported
Taxonomic identifieri4498 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladePooideaePoodaePoeaeAveninaeAvena

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2424Sequence analysisAdd
BLAST
Chaini25 – 228204Sequence analysisPRO_5004221838Add
BLAST

Proteomic databases

PRIDEiQ38769.

Structurei

3D structure databases

ProteinModelPortaliQ38769.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3Di2.60.110.10. 1 hit.
InterProiIPR001938. Thaumatin.
IPR017949. Thaumatin_CS.
[Graphical view]
PANTHERiPTHR31048. PTHR31048. 1 hit.
PfamiPF00314. Thaumatin. 1 hit.
[Graphical view]
PIRSFiPIRSF002703. Thaumatin. 1 hit.
PRINTSiPR00347. THAUMATIN.
SMARTiSM00205. THN. 1 hit.
[Graphical view]
SUPFAMiSSF49870. SSF49870. 1 hit.
PROSITEiPS00316. THAUMATIN_1. 1 hit.
PS51367. THAUMATIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q38769-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSSVLQLL PLLMLAITIA TTDAATITVV NKCSYTVWPG ALPGGGVRLD
60 70 80 90 100
PGKSWALNMP AGTRGARVWP RTGCTFDASG RGHCVTGDCG GALACRVSGQ
110 120 130 140 150
QPATLAEYTL GKGGAKDFFD LSVIDGFNVP MSFQPVGGAA CRGATCAADI
160 170 180 190 200
TKQCPQELKV AGGCASACGK FGGDTYCCRG QFTDKCPPTN YSKFFKGKCP
210 220
DAYSYAKDDQ TSTFTCPVGT NYQIVLCP
Length:228
Mass (Da):23,676
Last modified:November 1, 1996 - v1
Checksum:iFE8D96242428470E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U57787 mRNA. Translation: AAB02259.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U57787 mRNA. Translation: AAB02259.1.

3D structure databases

ProteinModelPortaliQ38769.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ38769.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di2.60.110.10. 1 hit.
InterProiIPR001938. Thaumatin.
IPR017949. Thaumatin_CS.
[Graphical view]
PANTHERiPTHR31048. PTHR31048. 1 hit.
PfamiPF00314. Thaumatin. 1 hit.
[Graphical view]
PIRSFiPIRSF002703. Thaumatin. 1 hit.
PRINTSiPR00347. THAUMATIN.
SMARTiSM00205. THN. 1 hit.
[Graphical view]
SUPFAMiSSF49870. SSF49870. 1 hit.
PROSITEiPS00316. THAUMATIN_1. 1 hit.
PS51367. THAUMATIN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Barley and oat thaumatin-like permatin antifungal proteins."
    Skadsen R.W., Herbst J.M.
    Submitted (MAY-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: PrairieImported.
    Tissue: EndospermImported.

Entry informationi

Entry nameiQ38769_AVESA
AccessioniPrimary (citable) accession number: Q38769
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: February 17, 2016
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.