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Q386F2

- Q386F2_TRYB2

UniProt

Q386F2 - Q386F2_TRYB2

Protein

40S ribosomal protein S4

Gene

Tb11.02.1085

Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (22 Nov 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. RNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

    Keywords - Ligandi

    RNA-binding, rRNA-bindingUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    40S ribosomal protein S4UniRule annotation
    Gene namesi
    ORF Names:Tb11.02.1085Imported, Tb11.02.1090Imported
    OrganismiTrypanosoma brucei brucei (strain 927/4 GUTat10.1)Imported
    Taxonomic identifieri999953 [NCBI]
    Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma
    ProteomesiUP000008524: Chromosome 11 Scaffold 1

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Interactioni

    Protein-protein interaction databases

    STRINGi5691.Tb11.02.1090.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3ZEYelectron microscopy5.5711-273[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S4e family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1471.
    HOGENOMiHOG000231325.
    KOiK02987.

    Family and domain databases

    HAMAPiMF_00485. Ribosomal_S4e.
    InterProiIPR005824. KOW.
    IPR000876. Ribosomal_S4e.
    IPR013845. Ribosomal_S4e_central_region.
    IPR013843. Ribosomal_S4e_N.
    IPR002942. S4_RNA-bd.
    [Graphical view]
    PANTHERiPTHR11581. PTHR11581. 1 hit.
    PfamiPF00467. KOW. 1 hit.
    PF00900. Ribosomal_S4e. 1 hit.
    PF08071. RS4NT. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002116. Ribosomal_S4. 1 hit.
    ProDomiPD002667. Ribosomal_S4e_central. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SMARTiSM00739. KOW. 1 hit.
    SM00363. S4. 1 hit.
    [Graphical view]
    PROSITEiPS50889. S4. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q386F2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKKHLKRLY APKDWMLSKL TGVFAPRPRA GPHKLRECLS LLIIIRNRLK    50
    YALNALEAQM ILRQGLVCVD GKPRKDGKYP AGFMDVVEIP KTGDRFRILY 100
    DVKGRFALVR VSEAESSIKM MKVVNVYTGT GRIPVAVTHD GHRIRYPDPR 150
    TSRGDTLVYD VKEKKVLDLI KIGNGKVVMV TGGANRGRIG EIVSIERHPG 200
    AFDIARLKDA SGHEFATRAT NIFVIGKDMS SVPVTLPKQQ GLRINVIQER 250
    EEKLIAAETR RTTQAHSKRK TKV 273
    Length:273
    Mass (Da):30,644
    Last modified:November 22, 2005 - v1
    Checksum:iCAAA858CC7C17982
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CH464491 Genomic DNA. Translation: EAN79328.1.
    CH464491 Genomic DNA. Translation: EAN79329.1.
    RefSeqiXP_828440.1. XM_823347.1.
    XP_828441.1. XM_823348.1.

    Genome annotation databases

    EnsemblProtistsiEAN79328; EAN79328; Tb11.02.1085.
    EAN79329; EAN79329; Tb11.02.1090.
    GeneIDi3664994.
    3664995.
    KEGGitbr:Tb11.02.1085.
    tbr:Tb11.02.1090.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CH464491 Genomic DNA. Translation: EAN79328.1 .
    CH464491 Genomic DNA. Translation: EAN79329.1 .
    RefSeqi XP_828440.1. XM_823347.1.
    XP_828441.1. XM_823348.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3ZEY electron microscopy 5.57 1 1-273 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 5691.Tb11.02.1090.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi EAN79328 ; EAN79328 ; Tb11.02.1085 .
    EAN79329 ; EAN79329 ; Tb11.02.1090 .
    GeneIDi 3664994.
    3664995.
    KEGGi tbr:Tb11.02.1085.
    tbr:Tb11.02.1090.

    Phylogenomic databases

    eggNOGi COG1471.
    HOGENOMi HOG000231325.
    KOi K02987.

    Family and domain databases

    HAMAPi MF_00485. Ribosomal_S4e.
    InterProi IPR005824. KOW.
    IPR000876. Ribosomal_S4e.
    IPR013845. Ribosomal_S4e_central_region.
    IPR013843. Ribosomal_S4e_N.
    IPR002942. S4_RNA-bd.
    [Graphical view ]
    PANTHERi PTHR11581. PTHR11581. 1 hit.
    Pfami PF00467. KOW. 1 hit.
    PF00900. Ribosomal_S4e. 1 hit.
    PF08071. RS4NT. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002116. Ribosomal_S4. 1 hit.
    ProDomi PD002667. Ribosomal_S4e_central. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SMARTi SM00739. KOW. 1 hit.
    SM00363. S4. 1 hit.
    [Graphical view ]
    PROSITEi PS50889. S4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 927/4 GUTat10.1Imported.
    2. "The genome of the African trypanosome Trypanosoma brucei."
      Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M.
      , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
      Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 927/4 GUTat10.1Imported.
    3. "High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
      Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
      Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

    Entry informationi

    Entry nameiQ386F2_TRYB2
    AccessioniPrimary (citable) accession number: Q386F2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 22, 2005
    Last sequence update: November 22, 2005
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3