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Q38420

- Q38420_BPP1

UniProt

Q38420 - Q38420_BPP1

Protein
Submitted name:

ParB

Gene

parB

Organism
Enterobacteria phage P1 (Bacteriophage P1)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 89 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei214 – 2141Citrate 2Imported

    GO - Molecular functioni

    1. DNA binding Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ParBImported
    Gene namesi
    Name:parBImported
    OrganismiEnterobacteria phage P1 (Bacteriophage P1)Imported
    Taxonomic identifieri10678 [NCBI]
    Taxonomic lineageiVirusesdsDNA viruses, no RNA stageCaudoviralesMyoviridaePunalikevirus
    Virus hostiEnterobacteriaceae [TaxID: 543]
    ProteomesiUP000001577: Genome, UP000008091: Genome

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1ZX4X-ray2.98A/B142-333[»]
    2NTZX-ray3.35A/B142-333[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ38420.

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni209 – 2113Citrate 1 bindingImported
    Regioni218 – 2192Citrate 2 bindingImported

    Family and domain databases

    InterProiIPR004437. ParB/RepB/Spo0J.
    IPR003115. ParB/Sulfiredoxin_dom.
    IPR014884. ParB_fam_C.
    [Graphical view]
    PfamiPF08775. ParB. 1 hit.
    PF02195. ParBc. 1 hit.
    [Graphical view]
    SMARTiSM00470. ParB. 1 hit.
    [Graphical view]
    SUPFAMiSSF110849. SSF110849. 1 hit.
    TIGRFAMsiTIGR00180. parB_part. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q38420-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSKKNRPTIG RTLNPSILSG FDSSSASGDR VEQVFKLSTG RQATFIEEVI    50
    PPNQVESDTF VDQHNNGRDQ ASLTPKSLKS IRSTIKHQQF YPAIGVRRAT 100
    GKIEILDGSR RRASAILENV GLRVLVTDQE ISVQEAQNLA KDVQTALQHS 150
    IREIGLRLMR MKNDGMSQKD IAAKEGLSQA KVTRALQAAS APEELVALFP 200
    VQSELTFSDY KTLCAVGDEM GNKNLEFDQL IQNISPEIND ILSIEEMAED 250
    EVKNKILRLI TKEASLLTDK GSKDKSVVTE LWKFEDKDRF ARKRVKGRAF 300
    SYEFNRLSKE LQEELDRMIG HILRKSLDKK PKP 333
    Length:333
    Mass (Da):37,441
    Last modified:November 1, 1996 - v1
    Checksum:iBC8C1B240B9BCB83
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    K02380 Genomic DNA. Translation: AAA99231.1.
    AF234172 Genomic DNA. Translation: AAQ14031.1.
    AF234173 Genomic DNA. Translation: AAQ14139.1.
    PIRiB23752. BVECPB.
    RefSeqiYP_006527.1. NC_005856.1.

    Genome annotation databases

    GeneIDi2777493.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    K02380 Genomic DNA. Translation: AAA99231.1 .
    AF234172 Genomic DNA. Translation: AAQ14031.1 .
    AF234173 Genomic DNA. Translation: AAQ14139.1 .
    PIRi B23752. BVECPB.
    RefSeqi YP_006527.1. NC_005856.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1ZX4 X-ray 2.98 A/B 142-333 [» ]
    2NTZ X-ray 3.35 A/B 142-333 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 2777493.

    Miscellaneous databases

    EvolutionaryTracei Q38420.

    Family and domain databases

    InterProi IPR004437. ParB/RepB/Spo0J.
    IPR003115. ParB/Sulfiredoxin_dom.
    IPR014884. ParB_fam_C.
    [Graphical view ]
    Pfami PF08775. ParB. 1 hit.
    PF02195. ParBc. 1 hit.
    [Graphical view ]
    SMARTi SM00470. ParB. 1 hit.
    [Graphical view ]
    SUPFAMi SSF110849. SSF110849. 1 hit.
    TIGRFAMsi TIGR00180. parB_part. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE.
    2. "Partition of unit-copy miniplasmids to daughter cells. III. The DNA sequence and functional organization of the P1 partition region."
      Abeles A.L., Friedman S.A., Austin S.J.
      J. Mol. Biol. 185:261-272(1985) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
    3. "P1 plasmid replication: multiple functions of RepA protein at the origin."
      Chattoraj D.K., Snyder K.M., Abeles A.L.
      Proc. Natl. Acad. Sci. U.S.A. 82:2588-2592(1985) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
    4. "P1 plasmid replication requires Escherichia coli Dam-methylated DNA."
      Abeles A.L., Austin S.J.
      Gene 74:185-186(1988) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
    5. "Fine-structure analysis of the P1 plasmid partition site."
      Martin K.A., Davis M.A., Austin S.
      J. Bacteriol. 173:3630-3634(1991) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
    6. Lobocka M.B.
      Submitted (FEB-2000) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: Mod1902::IS5 c1.100 rev dmtImported.
    7. Rusin M., Samojedny A.
      Submitted (FEB-2000) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: Mod749::IS5 c1.100 mutantImported.
    8. E. coli Genome Project
      Submitted (FEB-2000) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: Mod1902::IS5 c1.100 rev dmtImported.
    9. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: Mod1902::IS5 c1.100 rev dmtImported and Mod749::IS5 c1.100 mutantImported.
    10. "Structures of ParB bound to DNA reveal mechanism of partition complex formation."
      Schumacher M.A., Funnell B.E.
      Nature 438:516-519(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.98 ANGSTROMS) OF 142-333.
    11. "Structure of a four-way bridged ParB-DNA complex provides insight into P1 segrosome assembly."
      Schumacher M.A., Mansoor A., Funnell B.E.
      J. Biol. Chem. 282:10456-10464(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.35 ANGSTROMS) OF 142-333.

    Entry informationi

    Entry nameiQ38420_BPP1
    AccessioniPrimary (citable) accession number: Q38420
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 1, 1996
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 89 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3