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Q38420 (Q38420_BPP1) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 87. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Name:parB EMBL AAA99231.1
OrganismEnterobacteria phage P1 (Bacteriophage P1) [Reference proteome] EMBL AAA99231.1
Taxonomic identifier10678 [NCBI]
Taxonomic lineageVirusesdsDNA viruses, no RNA stageCaudoviralesMyoviridaePunalikevirus
Virus hostEnterobacteriaceae [TaxID: 543]

Protein attributes

Sequence length333 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Technical term3D-structure PDB 1ZX4 PDB 2NTZ
Complete proteome
Reference proteome
Gene Ontology (GO)
   Molecular_functionDNA binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region209 – 2113Citrate 1 binding PDB 1ZX4
Region218 – 2192Citrate 2 binding PDB 1ZX4

Sites

Binding site2141Citrate 2 PDB 1ZX4

Sequences

Sequence LengthMass (Da)Tools
Q38420 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: BC8C1B240B9BCB83

FASTA33337,441
        10         20         30         40         50         60 
MSKKNRPTIG RTLNPSILSG FDSSSASGDR VEQVFKLSTG RQATFIEEVI PPNQVESDTF 

        70         80         90        100        110        120 
VDQHNNGRDQ ASLTPKSLKS IRSTIKHQQF YPAIGVRRAT GKIEILDGSR RRASAILENV 

       130        140        150        160        170        180 
GLRVLVTDQE ISVQEAQNLA KDVQTALQHS IREIGLRLMR MKNDGMSQKD IAAKEGLSQA 

       190        200        210        220        230        240 
KVTRALQAAS APEELVALFP VQSELTFSDY KTLCAVGDEM GNKNLEFDQL IQNISPEIND 

       250        260        270        280        290        300 
ILSIEEMAED EVKNKILRLI TKEASLLTDK GSKDKSVVTE LWKFEDKDRF ARKRVKGRAF 

       310        320        330 
SYEFNRLSKE LQEELDRMIG HILRKSLDKK PKP 

« Hide

References

[1]"P1 plasmid replication: replicon structure."
Abeles A.L., Snyder K.M., Chattoraj D.K.
J. Mol. Biol. 173:307-324(1984) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Partition of unit-copy miniplasmids to daughter cells. III. The DNA sequence and functional organization of the P1 partition region."
Abeles A.L., Friedman S.A., Austin S.J.
J. Mol. Biol. 185:261-272(1985) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[3]"P1 plasmid replication: multiple functions of RepA protein at the origin."
Chattoraj D.K., Snyder K.M., Abeles A.L.
Proc. Natl. Acad. Sci. U.S.A. 82:2588-2592(1985) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[4]"P1 plasmid replication requires Escherichia coli Dam-methylated DNA."
Abeles A.L., Austin S.J.
Gene 74:185-186(1988) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Fine-structure analysis of the P1 plasmid partition site."
Martin K.A., Davis M.A., Austin S.
J. Bacteriol. 173:3630-3634(1991) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[6]Lobocka M.B.
Submitted (FEB-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Mod1902::IS5 c1.100 rev dmt EMBL AAQ14139.1.
[7]E. coli Genome Project
Submitted (FEB-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Mod1902::IS5 c1.100 rev dmt EMBL AAQ14139.1.
[8]Rusin M., Samojedny A.
Submitted (FEB-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Mod749::IS5 c1.100 mutant EMBL AAQ14031.1.
[9]"Genome of bacteriophage P1."
Lobocka M.B., Rose D.J., Plunkett G. III, Rusin M., Samojedny A., Lehnherr H., Yarmolinsky M.B., Blattner F.R.
J. Bacteriol. 186:7032-7068(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Mod1902::IS5 c1.100 rev dmt EMBL AAQ14139.1 and Mod749::IS5 c1.100 mutant EMBL AAQ14031.1.
[10]"Structures of ParB bound to DNA reveal mechanism of partition complex formation."
Schumacher M.A., Funnell B.E.
Nature 438:516-519(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.98 ANGSTROMS) OF 142-333 IN COMPLEX WITH CITRATE.
[11]"Structure of a four-way bridged ParB-DNA complex provides insight into P1 segrosome assembly."
Schumacher M.A., Mansoor A., Funnell B.E.
J. Biol. Chem. 282:10456-10464(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.35 ANGSTROMS) OF 142-333.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
K02380 Genomic DNA. Translation: AAA99231.1.
AF234172 Genomic DNA. Translation: AAQ14031.1.
AF234173 Genomic DNA. Translation: AAQ14139.1.
PIRBVECPB. B23752.
RefSeqYP_006527.1. NC_005856.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1ZX4X-ray2.98A/B142-333[»]
2NTZX-ray3.35A/B142-333[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID2777493.

Family and domain databases

InterProIPR004437. ParB/RepB/Spo0J.
IPR003115. ParB/Sulfiredoxin_dom.
IPR014884. ParB_fam_C.
[Graphical view]
PfamPF08775. ParB. 1 hit.
PF02195. ParBc. 1 hit.
[Graphical view]
SMARTSM00470. ParB. 1 hit.
[Graphical view]
SUPFAMSSF110849. SSF110849. 1 hit.
TIGRFAMsTIGR00180. parB_part. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceQ38420.

Entry information

Entry nameQ38420_BPP1
AccessionPrimary (citable) accession number: Q38420
Entry history
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: July 9, 2014
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)