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Q338B9

- GCN5_ORYSJ

UniProt

Q338B9 - GCN5_ORYSJ

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Protein

Histone acetyltransferase GCN5

Gene
GCN5, Os10g0415900, LOC_Os10g28040
Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Acetylates histone H3. Acetylation of histones gives a specific tag for epigenetic transcription activation. Operates in concert with certain DNA-binding transcriptional activators. Acts via the formation of large multiprotein complexes that modify the chromatin By similarity.

Catalytic activityi

Acetyl-CoA + [histone] = CoA + acetyl-[histone].

GO - Molecular functioni

  1. DNA binding Source: EnsemblPlants/Gramene
  2. H3 histone acetyltransferase activity Source: EnsemblPlants/Gramene

GO - Biological processi

  1. flower development Source: EnsemblPlants/Gramene
  2. regulation of transcription, DNA-templated Source: UniProtKB-KW
  3. response to light stimulus Source: EnsemblPlants/Gramene
  4. root morphogenesis Source: EnsemblPlants/Gramene
  5. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Activator, Acyltransferase, Chromatin regulator, Transferase

Keywords - Biological processi

Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Histone acetyltransferase GCN5 (EC:2.3.1.48)
Gene namesi
Name:GCN5
Ordered Locus Names:Os10g0415900, LOC_Os10g28040
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 10

Organism-specific databases

GrameneiQ338B9.

Subcellular locationi

Nucleus Inferred

GO - Cellular componenti

  1. histone acetyltransferase complex Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 511511Histone acetyltransferase GCN5PRO_0000269749Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os10g28040.1.

Structurei

3D structure databases

ProteinModelPortaliQ338B9.
SMRiQ338B9. Positions 160-322.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini168 – 315148N-acetyltransferaseAdd
BLAST
Domaini415 – 48672BromoAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi8 – 6760Ser-richAdd
BLAST
Compositional biasi68 – 736Poly-Asp
Compositional biasi104 – 12421Ala-richAdd
BLAST

Sequence similaritiesi

Contains 1 bromo domain.

Keywords - Domaini

Bromodomain

Phylogenomic databases

eggNOGiCOG5076.
HOGENOMiHOG000192257.
KOiK06062.
OMAiMVIRNNI.

Family and domain databases

Gene3Di1.20.920.10. 1 hit.
3.40.630.30. 1 hit.
InterProiIPR016181. Acyl_CoA_acyltransferase.
IPR001487. Bromodomain.
IPR018359. Bromodomain_CS.
IPR000182. GNAT_dom.
[Graphical view]
PfamiPF00583. Acetyltransf_1. 1 hit.
PF00439. Bromodomain. 1 hit.
[Graphical view]
PRINTSiPR00503. BROMODOMAIN.
SMARTiSM00297. BROMO. 1 hit.
[Graphical view]
SUPFAMiSSF47370. SSF47370. 1 hit.
SSF55729. SSF55729. 1 hit.
PROSITEiPS00633. BROMODOMAIN_1. 1 hit.
PS50014. BROMODOMAIN_2. 1 hit.
PS51186. GNAT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q338B9-1 [UniParc]FASTAAdd to Basket

« Hide

MDGLAAPSPS HSGATSGGGA SHRKRKLPPS SLSDATADED DDTTAPSSPS    50
TSPSSPSRPS SPSSSHSDDD DDDSLHTFTA ARLDGAPPSS SGRPPKPESS 100
TVSAAAAAAA AAAAPKPDSA SAAAGDGKED PKGLFTDNIQ TSGAYSAREE 150
GLKREEEAGR LKFLCYSNDG VDEHMIWLVG LKNIFARQLP NMPKEYIVRL 200
VMDRTHKSMM VIRNNIVVGG ITYRPYTSQK FGEIAFCAIT ADEQVKGYGT 250
RLMNHLKQHA RDADGLTHFL TYADNNAVGY FVKQGFTKEI TLDKERWQGY 300
IKDYDGGILM ECRIDQKLPY VDLATMIRRQ RQAIDEKIRE LSNCHIVYSG 350
IDFQKKEAGI PRRTMKPEDI QGLREAGWTP DQWGHSKSRS AFSPDYSTYR 400
QQLTNLMRSL LKNMNEHPDA WPFKEPVDSR DVPDYYDIIK DPIDLKTMSK 450
RVESEQYYVT LEMFVADMKR MFSNAKTYNS PDTIYYKCAS RLESFFSNKV 500
ASQLAQASTK N 511
Length:511
Mass (Da):56,685
Last modified:December 6, 2005 - v1
Checksum:iA506C27F8D96D673
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DP000086 Genomic DNA. Translation: ABB47615.1.
AP008216 Genomic DNA. Translation: BAF26518.1.
AK111779 mRNA. No translation available.
RefSeqiNP_001064604.1. NM_001071139.1.
UniGeneiOs.21782.

Genome annotation databases

EnsemblPlantsiOS10T0415900-01; OS10T0415900-01; OS10G0415900.
GeneIDi4348629.
KEGGiosa:4348629.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DP000086 Genomic DNA. Translation: ABB47615.1 .
AP008216 Genomic DNA. Translation: BAF26518.1 .
AK111779 mRNA. No translation available.
RefSeqi NP_001064604.1. NM_001071139.1.
UniGenei Os.21782.

3D structure databases

ProteinModelPortali Q338B9.
SMRi Q338B9. Positions 160-322.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 39947.LOC_Os10g28040.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS10T0415900-01 ; OS10T0415900-01 ; OS10G0415900 .
GeneIDi 4348629.
KEGGi osa:4348629.

Organism-specific databases

Gramenei Q338B9.

Phylogenomic databases

eggNOGi COG5076.
HOGENOMi HOG000192257.
KOi K06062.
OMAi MVIRNNI.

Family and domain databases

Gene3Di 1.20.920.10. 1 hit.
3.40.630.30. 1 hit.
InterProi IPR016181. Acyl_CoA_acyltransferase.
IPR001487. Bromodomain.
IPR018359. Bromodomain_CS.
IPR000182. GNAT_dom.
[Graphical view ]
Pfami PF00583. Acetyltransf_1. 1 hit.
PF00439. Bromodomain. 1 hit.
[Graphical view ]
PRINTSi PR00503. BROMODOMAIN.
SMARTi SM00297. BROMO. 1 hit.
[Graphical view ]
SUPFAMi SSF47370. SSF47370. 1 hit.
SSF55729. SSF55729. 1 hit.
PROSITEi PS00633. BROMODOMAIN_1. 1 hit.
PS50014. BROMODOMAIN_2. 1 hit.
PS51186. GNAT. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "In-depth view of structure, activity, and evolution of rice chromosome 10."
    Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S., Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D., Oates R., Palmer M., Pries G., Gibson J., Anderson H.
    , Paradkar M., Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F., Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M., Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F., Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D., Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R., Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S., Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S., Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R., Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M., Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R., Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E., Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.
    Science 300:1566-1569(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiGCN5_ORYSJ
AccessioniPrimary (citable) accession number: Q338B9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 9, 2007
Last sequence update: December 6, 2005
Last modified: May 14, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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