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Q32PZ5 (Q32PZ5_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Ctr9 protein EMBL AAI07917.1
Gene names
Name:Ctr9 EMBL AAI07917.1 RGD 1311097
Synonyms:Sh2bp1 RGD 1311097
OrganismRattus norvegicus (Rat) EMBL AAI07917.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length493 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   DomainTPR repeat SAAS SAAS001440
Gene Ontology (GO)
   Biological_processJAK-STAT cascade

Inferred from electronic annotation. Source: Compara

cellular response to lipopolysaccharide

Inferred from electronic annotation. Source: Compara

endodermal cell fate commitment

Inferred from electronic annotation. Source: Compara

histone H2B ubiquitination

Inferred from electronic annotation. Source: Compara

histone H3-K4 trimethylation

Inferred from electronic annotation. Source: Compara

histone monoubiquitination

Inferred from electronic annotation. Source: Compara

interleukin-6-mediated signaling pathway

Inferred from electronic annotation. Source: Compara

negative regulation of myeloid cell differentiation

Inferred from electronic annotation. Source: Compara

negative regulation of transcription from RNA polymerase II promoter

Inferred from electronic annotation. Source: Compara

positive regulation of histone H3-K4 methylation

Inferred from electronic annotation. Source: Compara

positive regulation of histone H3-K79 methylation

Inferred from electronic annotation. Source: Compara

positive regulation of transcription elongation from RNA polymerase II promoter

Inferred from electronic annotation. Source: Compara

positive regulation of transcription from RNA polymerase II promoter

Inferred from electronic annotation. Source: Compara

stem cell maintenance

Inferred from electronic annotation. Source: Compara

   Cellular_componentCdc73/Paf1 complex

Inferred from electronic annotation. Source: Compara

transcriptionally active chromatin

Inferred from electronic annotation. Source: Compara

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL AAI07917.1

Sequences

Sequence LengthMass (Da)Tools
Q32PZ5 [UniParc].

Last modified December 6, 2005. Version 1.
Checksum: 045234A8C7056A83

FASTA49355,534
        10         20         30         40         50         60 
SDVWLNLAHI YVEQKQYISA VQMYENCLRK FYKHQNTEVV LYLARALFKC GKLQECKQTL 

        70         80         90        100        110        120 
LKARHVAPSD TVLMFNVALV LQRLATSVLK DEKSNLKEVL NAVKELELAH RYFSYLSKVG 

       130        140        150        160        170        180 
DKMRFDLALA ASEARQCSDL LSQAQYHVAR ARKQDEEERE LRAKQEQEKE LLRQKLLKEQ 

       190        200        210        220        230        240 
EEKRLREKEE QKKLLEQRAQ YVEKTKNILM FTGETEATKE KKRGGGGGRR SKKGGEFDEF 

       250        260        270        280        290        300 
VNDDTDDDLP ISKKKKKRKG SGSEQEGEEE EGGERKKKRR RRPPKGEEGS DDDETENGPK 

       310        320        330        340        350        360 
PKKRRPPRAE KKKAPKPERL PPSMKGKIKS KAIISSSDDS SDEDKLKIAD EGHPRNSNSD 

       370        380        390        400        410        420 
SDDDERPNRR ASSESDSDDN QNKSGSEAGS PRRSGRQESD EDSDSDQPSR KRRRSGSEQS 

       430        440        450        460        470        480 
DNESAQSGRS PSGGSENEND SRPVSPSAES DHESEQGSDN EGSGQGSGNE SEPEGSNNEA 

       490 
SDRGSEHGSD DSD

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References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Placenta EMBL AAI07917.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC107916 mRNA. Translation: AAI07917.1.
IPIIPI00371679.
UniGeneRn.102000.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000023741.
Q32PZ5.

PTM databases

PhosphoSiteQ32PZ5.

Proteomic databases

PaxDbQ32PZ5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

UCSCRGD:1311097. rat.

Organism-specific databases

RGD1311097. Ctr9.

Phylogenomic databases

eggNOGCOG0457.
HOGENOMHOG000246926.
InParanoidQ32PZ5.

Gene expression databases

ArrayExpressQ32PZ5.
GenevestigatorQ32PZ5.

Family and domain databases

Gene3D1.25.40.10. 1 hit.
InterProIPR001440. TPR-1.
IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical.
[Graphical view]
PfamPF00515. TPR_1. 1 hit.
[Graphical view]
PROSITEPS50293. TPR_REGION. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ32PZ5_RAT
AccessionPrimary (citable) accession number: Q32PZ5
Entry history
Integrated into UniProtKB/TrEMBL: December 6, 2005
Last sequence update: December 6, 2005
Last modified: April 3, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info