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Q32PZ5

- Q32PZ5_RAT

UniProt

Q32PZ5 - Q32PZ5_RAT

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Protein
Submitted name:

Ctr9 protein

Gene

Ctr9

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  1. cellular response to lipopolysaccharide Source: Ensembl
  2. endodermal cell fate commitment Source: Ensembl
  3. histone H2B ubiquitination Source: Ensembl
  4. histone H3-K4 trimethylation Source: Ensembl
  5. histone monoubiquitination Source: Ensembl
  6. interleukin-6-mediated signaling pathway Source: Ensembl
  7. JAK-STAT cascade Source: Ensembl
  8. negative regulation of myeloid cell differentiation Source: Ensembl
  9. negative regulation of transcription from RNA polymerase II promoter Source: Ensembl
  10. positive regulation of histone H3-K4 methylation Source: Ensembl
  11. positive regulation of histone H3-K79 methylation Source: Ensembl
  12. positive regulation of transcription elongation from RNA polymerase II promoter Source: Ensembl
  13. positive regulation of transcription from RNA polymerase II promoter Source: Ensembl
  14. stem cell maintenance Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Ctr9 proteinImported
Gene namesi
Name:Ctr9Imported
Synonyms:Sh2bp1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1311097. Ctr9.

Subcellular locationi

GO - Cellular componenti

  1. Cdc73/Paf1 complex Source: Ensembl
  2. transcriptionally active chromatin Source: Ensembl
Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ32PZ5.

PTM databases

PhosphoSiteiQ32PZ5.

Expressioni

Gene expression databases

ExpressionAtlasiQ32PZ5. baseline.
GenevestigatoriQ32PZ5.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000023741.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0457.
HOGENOMiHOG000246926.
PhylomeDBiQ32PZ5.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical_dom.
IPR001440. TPR_1.
[Graphical view]
PfamiPF00515. TPR_1. 1 hit.
[Graphical view]
PROSITEiPS50293. TPR_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q32PZ5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
SDVWLNLAHI YVEQKQYISA VQMYENCLRK FYKHQNTEVV LYLARALFKC
60 70 80 90 100
GKLQECKQTL LKARHVAPSD TVLMFNVALV LQRLATSVLK DEKSNLKEVL
110 120 130 140 150
NAVKELELAH RYFSYLSKVG DKMRFDLALA ASEARQCSDL LSQAQYHVAR
160 170 180 190 200
ARKQDEEERE LRAKQEQEKE LLRQKLLKEQ EEKRLREKEE QKKLLEQRAQ
210 220 230 240 250
YVEKTKNILM FTGETEATKE KKRGGGGGRR SKKGGEFDEF VNDDTDDDLP
260 270 280 290 300
ISKKKKKRKG SGSEQEGEEE EGGERKKKRR RRPPKGEEGS DDDETENGPK
310 320 330 340 350
PKKRRPPRAE KKKAPKPERL PPSMKGKIKS KAIISSSDDS SDEDKLKIAD
360 370 380 390 400
EGHPRNSNSD SDDDERPNRR ASSESDSDDN QNKSGSEAGS PRRSGRQESD
410 420 430 440 450
EDSDSDQPSR KRRRSGSEQS DNESAQSGRS PSGGSENEND SRPVSPSAES
460 470 480 490
DHESEQGSDN EGSGQGSGNE SEPEGSNNEA SDRGSEHGSD DSD
Length:493
Mass (Da):55,534
Last modified:December 6, 2005 - v1
Checksum:i045234A8C7056A83
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC107916 mRNA. Translation: AAI07917.1.
UniGeneiRn.102000.

Genome annotation databases

UCSCiRGD:1311097. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC107916 mRNA. Translation: AAI07917.1 .
UniGenei Rn.102000.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10116.ENSRNOP00000023741.

PTM databases

PhosphoSitei Q32PZ5.

Proteomic databases

PaxDbi Q32PZ5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

UCSCi RGD:1311097. rat.

Organism-specific databases

RGDi 1311097. Ctr9.

Phylogenomic databases

eggNOGi COG0457.
HOGENOMi HOG000246926.
PhylomeDBi Q32PZ5.

Gene expression databases

ExpressionAtlasi Q32PZ5. baseline.
Genevestigatori Q32PZ5.

Family and domain databases

Gene3Di 1.25.40.10. 1 hit.
InterProi IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical_dom.
IPR001440. TPR_1.
[Graphical view ]
Pfami PF00515. TPR_1. 1 hit.
[Graphical view ]
PROSITEi PS50293. TPR_REGION. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: PlacentaImported.

Entry informationi

Entry nameiQ32PZ5_RAT
AccessioniPrimary (citable) accession number: Q32PZ5
Entry historyi
Integrated into UniProtKB/TrEMBL: December 6, 2005
Last sequence update: December 6, 2005
Last modified: October 29, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)