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Q32PZ5

- Q32PZ5_RAT

UniProt

Q32PZ5 - Q32PZ5_RAT

Protein
Submitted name:

Ctr9 protein

Gene

Ctr9

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 48 (01 Oct 2014)
      Sequence version 1 (06 Dec 2005)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. cellular response to lipopolysaccharide Source: Ensembl
    2. endodermal cell fate commitment Source: Ensembl
    3. histone H2B ubiquitination Source: Ensembl
    4. histone H3-K4 trimethylation Source: Ensembl
    5. histone monoubiquitination Source: Ensembl
    6. interleukin-6-mediated signaling pathway Source: Ensembl
    7. JAK-STAT cascade Source: Ensembl
    8. negative regulation of myeloid cell differentiation Source: Ensembl
    9. negative regulation of transcription from RNA polymerase II promoter Source: Ensembl
    10. positive regulation of histone H3-K4 methylation Source: Ensembl
    11. positive regulation of histone H3-K79 methylation Source: Ensembl
    12. positive regulation of transcription elongation from RNA polymerase II promoter Source: Ensembl
    13. positive regulation of transcription from RNA polymerase II promoter Source: Ensembl
    14. stem cell maintenance Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Ctr9 proteinImported
    Gene namesi
    Name:Ctr9Imported
    Synonyms:Sh2bp1Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi1311097. Ctr9.

    Subcellular locationi

    GO - Cellular componenti

    1. Cdc73/Paf1 complex Source: Ensembl
    2. transcriptionally active chromatin Source: Ensembl

    PTM / Processingi

    Proteomic databases

    PaxDbiQ32PZ5.

    PTM databases

    PhosphoSiteiQ32PZ5.

    Expressioni

    Gene expression databases

    GenevestigatoriQ32PZ5.

    Interactioni

    Protein-protein interaction databases

    STRINGi10116.ENSRNOP00000023741.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0457.
    HOGENOMiHOG000246926.
    InParanoidiQ32PZ5.
    PhylomeDBiQ32PZ5.

    Family and domain databases

    Gene3Di1.25.40.10. 1 hit.
    InterProiIPR013026. TPR-contain_dom.
    IPR011990. TPR-like_helical.
    IPR001440. TPR_1.
    [Graphical view]
    PfamiPF00515. TPR_1. 1 hit.
    [Graphical view]
    PROSITEiPS50293. TPR_REGION. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    Q32PZ5-1 [UniParc]FASTAAdd to Basket

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    SDVWLNLAHI YVEQKQYISA VQMYENCLRK FYKHQNTEVV LYLARALFKC    50
    GKLQECKQTL LKARHVAPSD TVLMFNVALV LQRLATSVLK DEKSNLKEVL 100
    NAVKELELAH RYFSYLSKVG DKMRFDLALA ASEARQCSDL LSQAQYHVAR 150
    ARKQDEEERE LRAKQEQEKE LLRQKLLKEQ EEKRLREKEE QKKLLEQRAQ 200
    YVEKTKNILM FTGETEATKE KKRGGGGGRR SKKGGEFDEF VNDDTDDDLP 250
    ISKKKKKRKG SGSEQEGEEE EGGERKKKRR RRPPKGEEGS DDDETENGPK 300
    PKKRRPPRAE KKKAPKPERL PPSMKGKIKS KAIISSSDDS SDEDKLKIAD 350
    EGHPRNSNSD SDDDERPNRR ASSESDSDDN QNKSGSEAGS PRRSGRQESD 400
    EDSDSDQPSR KRRRSGSEQS DNESAQSGRS PSGGSENEND SRPVSPSAES 450
    DHESEQGSDN EGSGQGSGNE SEPEGSNNEA SDRGSEHGSD DSD 493
    Length:493
    Mass (Da):55,534
    Last modified:December 6, 2005 - v1
    Checksum:i045234A8C7056A83
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC107916 mRNA. Translation: AAI07917.1.
    UniGeneiRn.102000.

    Genome annotation databases

    UCSCiRGD:1311097. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC107916 mRNA. Translation: AAI07917.1 .
    UniGenei Rn.102000.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10116.ENSRNOP00000023741.

    PTM databases

    PhosphoSitei Q32PZ5.

    Proteomic databases

    PaxDbi Q32PZ5.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    UCSCi RGD:1311097. rat.

    Organism-specific databases

    RGDi 1311097. Ctr9.

    Phylogenomic databases

    eggNOGi COG0457.
    HOGENOMi HOG000246926.
    InParanoidi Q32PZ5.
    PhylomeDBi Q32PZ5.

    Gene expression databases

    Genevestigatori Q32PZ5.

    Family and domain databases

    Gene3Di 1.25.40.10. 1 hit.
    InterProi IPR013026. TPR-contain_dom.
    IPR011990. TPR-like_helical.
    IPR001440. TPR_1.
    [Graphical view ]
    Pfami PF00515. TPR_1. 1 hit.
    [Graphical view ]
    PROSITEi PS50293. TPR_REGION. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: PlacentaImported.

    Entry informationi

    Entry nameiQ32PZ5_RAT
    AccessioniPrimary (citable) accession number: Q32PZ5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 6, 2005
    Last sequence update: December 6, 2005
    Last modified: October 1, 2014
    This is version 48 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)