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Protein

Pentatricopeptide repeat domain-containing protein 3, mitochondrial

Gene

ptcd3

Organism
Xenopus laevis (African clawed frog)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Mitochondrial protein that may have a role in mitochondrial translation.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding
Biological processTranslation regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat domain-containing protein 3, mitochondrial
Gene namesi
Name:ptcd3
OrganismiXenopus laevis (African clawed frog)
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-961486. ptcd3.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 13MitochondrionSequence analysisAdd BLAST13
ChainiPRO_000030503214 – 669Pentatricopeptide repeat domain-containing protein 3, mitochondrialAdd BLAST656

Structurei

3D structure databases

SMRiQ32N55.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati129 – 163PPR 1Add BLAST35
Repeati164 – 199PPR 2Add BLAST36
Repeati209 – 239PPR 3Add BLAST31
Repeati240 – 274PPR 4Add BLAST35
Repeati275 – 314PPR 5Add BLAST40
Repeati315 – 351PPR 6Add BLAST37
Repeati352 – 392PPR 7Add BLAST41
Repeati396 – 430PPR 8Add BLAST35
Repeati438 – 472PPR 9Add BLAST35
Repeati473 – 507PPR 10Add BLAST35
Repeati556 – 590PPR 11Add BLAST35

Sequence similaritiesi

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

HOVERGENiHBG068809.
KOiK17659.

Family and domain databases

InterProiView protein in InterPro
IPR002885. Pentatricopeptide_repeat.
PfamiView protein in Pfam
PF13812. PPR_3. 1 hit.
PROSITEiView protein in PROSITE
PS51375. PPR. 4 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q32N55-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAPCVRLGS VRCTGTLLRY FCGSARHQAA AASHEEIDIP RRKSWDKTAV
60 70 80 90 100
LQALAYTVSH DPTAAHYMFQ DDPFLVPKTS SEFRLYSLSK ESGRNAAKYI
110 120 130 140 150
IGTHPKLFQN DIAEPHIPCL MPENFQPQIE GVSEEALKER IQLRRIKESI
160 170 180 190 200
DLFDQLLQGG TAPSLETTNR LLDLICFYGD REPTRDIQTS EQNQQDDQDQ
210 220 230 240 250
QETEDSKKRP GQYRKASEIL GSWRENNNAE RIFNLMPERN AHSFCTLIQG
260 270 280 290 300
MVKYGSSNKA FNTYTDLMNN RLTADVQTFN ALILAAPDMK EKYNEKWDLI
310 320 330 340 350
VELLKHMVQQ NVRPNLLTFN SVLKSLRKCG TMARGLALQT INEMKALNIE
360 370 380 390 400
PSLGTYNHLL GVFYKGALSP RGQTEILSEV LDEIEGRSFT LRDPDDVYFF
410 420 430 440 450
TNAMRVCLDL KDIELAYRLH ALQQTADNRG LMGDFYLQST YYGRFFNLLC
460 470 480 490 500
MMENIDVILK WYRELIPSLY YPNSRGMLDL LQALDMDNCL DLIPQIWKDI
510 520 530 540 550
KQIGHSNKVE LVEEVLKLMA RDVQPAELQA AFADTALDIK SLYEVRDRVR
560 570 580 590 600
IVLEWSSASL GNISVLLARA GRTEEAWKML QRFKTNHRVP STEVVDEFLS
610 620 630 640 650
RAKMDANTNL AISLVQLAVG FSLPNTGKLA ERVMEEFNVS EEQRLTLEDL
660
QKSHSSSSSS SESSDSDRE
Length:669
Mass (Da):76,252
Last modified:December 6, 2005 - v1
Checksum:iA5EE65695AD8F135
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti489C → R in AAH94135 (Ref. 1) Curated1
Sequence conflicti638N → S in AAH94135 (Ref. 1) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC094135 mRNA. Translation: AAH94135.1.
BC108830 mRNA. Translation: AAI08831.1.
RefSeqiNP_001089914.1. NM_001096445.1.
UniGeneiXl.57300.

Genome annotation databases

GeneIDi734981.
KEGGixla:734981.

Similar proteinsi

Entry informationi

Entry nameiPTCD3_XENLA
AccessioniPrimary (citable) accession number: Q32N55
Secondary accession number(s): Q52KZ1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 2, 2007
Last sequence update: December 6, 2005
Last modified: August 30, 2017
This is version 38 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families