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Protein

Pentatricopeptide repeat domain-containing protein 3, mitochondrial

Gene

ptcd3

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Mitochondrial RNA-binding protein that may have a role in mitochondrial translation.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding
Biological processTranslation regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat domain-containing protein 3, mitochondrial
Gene namesi
Name:ptcd3
ORF Names:zgc:123014
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Unplaced

Organism-specific databases

ZFINiZDB-GENE-030131-6849 ptcd3

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 11MitochondrionSequence analysisAdd BLAST11
ChainiPRO_000030503112 – 667Pentatricopeptide repeat domain-containing protein 3, mitochondrialAdd BLAST656

Proteomic databases

PaxDbiQ32LU7
PRIDEiQ32LU7

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000074588

Structurei

3D structure databases

SMRiQ32LU7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati249 – 283PPR 1Add BLAST35
Repeati284 – 323PPR 2Add BLAST40
Repeati324 – 360PPR 3Add BLAST37
Repeati361 – 400PPR 4Add BLAST40
Repeati482 – 516PPR 5Add BLAST35
Repeati565 – 599PPR 6Add BLAST35

Sequence similaritiesi

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4422 Eukaryota
ENOG410XNQS LUCA
HOGENOMiHOG000115760
HOVERGENiHBG068809
InParanoidiQ32LU7
KOiK17659
PhylomeDBiQ32LU7

Family and domain databases

Gene3Di1.25.40.10, 1 hit
InterProiView protein in InterPro
IPR033443 PPR_long
IPR037387 PTCD3
IPR011990 TPR-like_helical_dom_sf
PANTHERiPTHR16276 PTHR16276, 1 hit
PfamiView protein in Pfam
PF17177 PPR_long, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q32LU7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSCSQALR HHACKSSKIL RIHLQKSWTN RSFAAYQQPD VSSQEEIVIP
60 70 80 90 100
KKKTWSKEAV LQALASTVKR DPTASDYRLQ DDSFLTPKTA SDFKLFCRSQ
110 120 130 140 150
ESGRNAAKYF INKYPKYFEK DYAQPHIPCL MPETLDAQLE DVSEAALKER
160 170 180 190 200
IQLRKVKAAV DLYDQLLQAG TSVSLDLTND LLDLICLYGE ADPVQETFEA
210 220 230 240 250
EQRSEEMEDI QDETQTKKGR SPKASDLLKT SWKENNNAER IFGLLSEPNT
260 270 280 290 300
RSYSALIRGM VKHAAYTQAF STYTDLLNNR LKADVHIFNA LLAAVPAVRP
310 320 330 340 350
KYNEKWELIL DLLKQMAEQK VKPNLLTLNA ILKSLRRCGA LGRSQAFPVI
360 370 380 390 400
SEMKVLSIEP SLASYNHLLA IFYRSGAQVQ TPTDVLVEVM NEVSGKSFTP
410 420 430 440 450
QDPDDAQFFT TAMRVCLDTK DMEQAYRVHE LLGVGDNWRF MGSDFQQSIY
460 470 480 490 500
YAWFFSLLCM MENIDVVMKW YRDLVPSVYY PSSNAMSDLL RALDTDSRLD
510 520 530 540 550
LIPKIWKDMK QLGHGNRQQL VEEVLTLMAR EKHCPEVQES FADCALDIMK
560 570 580 590 600
MYDTNERGKV IMSWTASSLS DVTTILLAAN RKQEAWEMLK LFRTHNRVPS
610 620 630 640 650
AELLNQFVTC VKEAGQVSQA VELVQISAAF CLSETPKLIQ RVQQEFELSE
660
EHKNILSDLE IQTFNGD
Length:667
Mass (Da):76,005
Last modified:December 6, 2005 - v1
Checksum:i541035ECC51ED801
GO

Sequence cautioni

The sequence AAH90536 differs from that shown. Contaminating sequence. Potential poly-A sequence.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC090536 mRNA Translation: AAH90536.1 Sequence problems.
BC109424 mRNA Translation: AAI09425.1
RefSeqiNP_001032449.1, NM_001037372.1
UniGeneiDr.34141

Genome annotation databases

GeneIDi553325
KEGGidre:553325

Similar proteinsi

Entry informationi

Entry nameiPTCD3_DANRE
AccessioniPrimary (citable) accession number: Q32LU7
Secondary accession number(s): Q5BLA3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 2, 2007
Last sequence update: December 6, 2005
Last modified: December 20, 2017
This is version 57 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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