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Protein

UPF0115 protein YfcN

Gene

yfcN

Organism
Shigella boydii serotype 4 (strain Sb227)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0115 protein YfcNUniRule annotation
Gene namesi
Name:yfcNUniRule annotation
Ordered Locus Names:SBO_2367
OrganismiShigella boydii serotype 4 (strain Sb227)
Taxonomic identifieri300268 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeShigella
Proteomesi
  • UP000007067 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000843651 – 183UPF0115 protein YfcNAdd BLAST183

Structurei

3D structure databases

ProteinModelPortaliQ31YC7.
SMRiQ31YC7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini98 – 173SmrUniRule annotationAdd BLAST76

Sequence similaritiesi

Belongs to the UPF0115 family.UniRule annotation
Contains 1 Smr domain.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000257487.
OMAiEHVYCAS.

Family and domain databases

HAMAPiMF_01042. UPF0115. 1 hit.
InterProiIPR002625. Smr_dom.
IPR022990. UPF0115.
[Graphical view]
PfamiPF01713. Smr. 1 hit.
[Graphical view]
SMARTiSM00463. SMR. 1 hit.
[Graphical view]
SUPFAMiSSF160443. SSF160443. 1 hit.
PROSITEiPS50828. SMR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q31YC7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKKTTLSEE DQALFRQLMA GTRKIKQDTI VHRPQRKKIS EVPVKRLIQE
60 70 80 90 100
QADASHYFSD EFQPLLNTEG PVKYVRPDVS HFEAKKLRRG DYSPELFLDL
110 120 130 140 150
HGLTQLQAKQ ELGALIAACR REHVFCACVM HGHGKHILKQ QTPLWLAQHP
160 170 180
HVMAFHQAPK EYGGDAALLV LIEVEEWLPP ELP
Length:183
Mass (Da):21,013
Last modified:December 6, 2005 - v1
Checksum:iD1FF3D68CF8C1DF2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000036 Genomic DNA. Translation: ABB66930.1.
RefSeqiWP_000730806.1. NC_007613.1.

Genome annotation databases

EnsemblBacteriaiABB66930; ABB66930; SBO_2367.
KEGGisbo:SBO_2367.
PATRICi18684093. VBIShiBoy33460_2963.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000036 Genomic DNA. Translation: ABB66930.1.
RefSeqiWP_000730806.1. NC_007613.1.

3D structure databases

ProteinModelPortaliQ31YC7.
SMRiQ31YC7.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABB66930; ABB66930; SBO_2367.
KEGGisbo:SBO_2367.
PATRICi18684093. VBIShiBoy33460_2963.

Phylogenomic databases

HOGENOMiHOG000257487.
OMAiEHVYCAS.

Family and domain databases

HAMAPiMF_01042. UPF0115. 1 hit.
InterProiIPR002625. Smr_dom.
IPR022990. UPF0115.
[Graphical view]
PfamiPF01713. Smr. 1 hit.
[Graphical view]
SMARTiSM00463. SMR. 1 hit.
[Graphical view]
SUPFAMiSSF160443. SSF160443. 1 hit.
PROSITEiPS50828. SMR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYFCN_SHIBS
AccessioniPrimary (citable) accession number: Q31YC7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: December 6, 2005
Last modified: November 2, 2016
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.