Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

ATP dependent DNA ligase, central

Gene

Tcr_1672

Organism
Thiomicrospira crunogena (strain XCL-2)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTCRU317025:GHE8-1715-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligase, centralImported
Gene namesi
Ordered Locus Names:Tcr_1672Imported
OrganismiThiomicrospira crunogena (strain XCL-2)Imported
Taxonomic identifieri317025 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaThiotrichalesPiscirickettsiaceaeThiomicrospira
ProteomesiUP000002713 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi317025.Tcr_1672.

Structurei

3D structure databases

ProteinModelPortaliQ31F09.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q31F09-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATAYADAKK PKMLLLETYQ ENQSVLGWWM SEKLDGVRAK WNGKALISRG
60 70 80 90 100
GHEIHAPDWF VADLPAFELD GELWTTRQDF ENVVSIVRQQ HPDSRWDAVS
110 120 130 140 150
YQIFEVPNQL GNLMDRLAVL KNYLAKHQLT HVQIIPQTKI ISEAQLTSEF
160 170 180 190 200
DRLTEIGAEG LVLRAPNQSY ETGRSRQALK MKAYEDDECQ VVGYKPGKGK
210 220 230 240 250
ISGLVGALLC DWHGKMQLSI GSGLSLQERE HPPEIGQWIT FKYYGLTGSG
260
KPRFPVFMRI RLDQDM
Length:266
Mass (Da):30,249
Last modified:December 6, 2005 - v1
Checksum:i3934005C2F46331E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000109 Genomic DNA. Translation: ABB42264.1.
RefSeqiWP_011371093.1. NC_007520.2.
YP_391938.1. NC_007520.2.

Genome annotation databases

EnsemblBacteriaiABB42264; ABB42264; Tcr_1672.
GeneIDi3760950.
KEGGitcx:Tcr_1672.
PATRICi23975418. VBIThiCru83387_1745.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000109 Genomic DNA. Translation: ABB42264.1.
RefSeqiWP_011371093.1. NC_007520.2.
YP_391938.1. NC_007520.2.

3D structure databases

ProteinModelPortaliQ31F09.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi317025.Tcr_1672.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABB42264; ABB42264; Tcr_1672.
GeneIDi3760950.
KEGGitcx:Tcr_1672.
PATRICi23975418. VBIThiCru83387_1745.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Enzyme and pathway databases

BioCyciTCRU317025:GHE8-1715-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: XCL-2Imported.

Entry informationi

Entry nameiQ31F09_THICR
AccessioniPrimary (citable) accession number: Q31F09
Entry historyi
Integrated into UniProtKB/TrEMBL: December 6, 2005
Last sequence update: December 6, 2005
Last modified: April 1, 2015
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.