Diguanylate cyclase (GGDEF domain) precursor - Thiomicrospira crunogena (strain XCL-2)

Preferred order of sections

Names and origin

Protein names

Submitted name:
Diguanylate cyclase (GGDEF domain) EMBL ABB42527.1

Gene names

Ordered Locus Names:

Tcr_1937

Organism

Thiomicrospira crunogena (strain XCL-2) [Complete proteome] [HAMAP] EMBL ABB42527.1

Taxonomic identifier

317025 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Thiotrichales › Piscirickettsiaceae › Thiomicrospira ›

Protein attributes

Sequence length	775 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABB42527.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	cyclic nucleotide biosynthetic process Inferred from electronic annotation. Source: InterPro intracellular signal transduction Inferred from electronic annotation. Source: InterPro
Cellular_component	outer membrane-bounded periplasmic space Inferred from electronic annotation. Source: InterPro
Molecular_function	phosphorus-oxygen lyase activity Inferred from electronic annotation. Source: InterPro transporter activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Signal peptide

1 – 28

28

Potential EMBL ABB42527.1

Chain

29 – 775

747

Potential EMBL ABB42527.1

PRO_5000102129

Sequences

Sequence

Length

Mass (Da)

Tools

Q31E96 [UniParc].

Last modified December 6, 2005. Version 1.
Checksum: A9452143B62397FA
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FASTA

775

88,327

        10         20         30         40         50         60 
MIFKRGLIGI VWLCMGWSIF LSNAAYADHP SKLNESALEK VTLQLKWHHQ FQFAGYYAAQ 

        70         80         90        100        110        120 
KEGYYQAEGL DVDIQPRDLH ENNIQQVIDN KAQYGVADSI LLLYQAKKAP LVIVAPIFQH 

       130        140        150        160        170        180 
SPQVLFTLAS SGIDSPYKLK NKKIALYQKD TDGFSVLAML HEVGVSPTVE RTIKSDASML 

       190        200        210        220        230        240 
VQNQVDAYAG YLTNEAYTFH ENNIPINVIN PLNYGIDLYG DMLFTSQKEV SQHPERVEKM 

       250        260        270        280        290        300 
RRATLKGWRY AMAHKTEMAH YIQSHYQMKK SFKHLMYEAN AIENVMSLST TPIGTLDEGR 

       310        320        330        340        350        360 
LQFIANLFQK HGLIDNKVNL KSGVYRSGQK EIEFTAAEKK WLNEHPVVNL AIDRFYAPVE 

       370        380        390        400        410        420 
FVNNQGQYAG IAKDIFQVIE QKTGIEFKPA MHLRWPEAVE SMKQKKLDVF SAVIETEERK 

       430        440        450        460        470        480 
DYVNFTMPYF KLPMAIATRE SAPYIADSKQ LSGKVICVVR DYASHAKLKR FYPNLPLLLV 

       490        500        510        520        530        540 
DTPKEGIEAV ANGKAYGYVD NVAVIGHHIK NSGLANVKIS GEMPFRADIA IAVRDDWPEL 

       550        560        570        580        590        600 
HSIIQKVLQQ IPPETYAEIS NKWLQVSYQK QYNWQQMTIV LAPILLLLGV FAFFNRKLRQ 

       610        620        630        640        650        660 
TQKKLQETNK QLSILSVTDH LTGVYNRQYL DQRLDSEVER VNRYGSTFSV IMMDLDNFKK 

       670        680        690        700        710        720 
VNDKFGHLVG DEVLVVFAQT VEKEIRKIDI FGRWGGEEFI LICPETPLTH AIQLGKKVRK 

       730        740        750        760        770 
SIESQDYPEN ISQTVSLGVA EYQTGEAIND CLNRADQNLY KAKQLGRNQV CPGLD

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References

[1]

"The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2."
Scott K.M., Sievert S.M., Abril F.N., Ball L.A., Barrett C.J., Blake R.A., Boller A.J., Chain P.S.G., Clark J.A., Davis C.R., Detter C., Do K.F., Dobrinski K.P., Faza B.I., Fitzpatrick K.A., Freyermuth S.K., Harmer T.L., Hauser L.J.

Zeruth G.T.
PLoS Biol. 4:1-17(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: XCL-2.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000109 Genomic DNA. Translation: ABB42527.1.
RefSeq	YP_392201.1. NC_007520.2.
3D structure databases
ProteinModelPortal	Q31E96.
ModBase	Search...
Protein-protein interaction databases
STRING	317025.Tcr_1937.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABB42527; ABB42527; Tcr_1937.
GeneID	3761131.
KEGG	tcx:Tcr_1937.
PATRIC	23975984. VBIThiCru83387_2020.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0715.
OMA	NSADVIW.
ProtClustDB	CLSK2464870.
Family and domain databases
InterPro	IPR001054. A/G_cyclase. IPR000160. GGDEF_dom. IPR015168. NMT1. IPR001638. SBP_bac_3. [Graphical view]
Pfam	PF00990. GGDEF. 1 hit. PF09084. NMT1. 1 hit. PF00497. SBP_bac_3. 1 hit. [Graphical view]
SMART	SM00267. GGDEF. 1 hit. SM00062. PBPb. 1 hit. [Graphical view]
SUPFAM	SSF55073. A/G_cyclase. 1 hit.
TIGRFAMs	TIGR00254. GGDEF. 1 hit.
PROSITE	PS50887. GGDEF. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q31E96_THICR

Accession

Primary (citable) accession number: Q31E96

Entry history

Integrated into UniProtKB/TrEMBL:	December 6, 2005
Last sequence update:	December 6, 2005
Last modified:	May 1, 2013
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Preferred order of sections

Names and origin

Protein attributes

Ontologies

Sequence annotation (Features)

Molecule processing

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Family and domain databases

Entry information