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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Prochlorococcus marinus (strain MIT 9312)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13
Gene namesi
Name:rplM
Synonyms:rpl13
Ordered Locus Names:PMT9312_1625
OrganismiProchlorococcus marinus (strain MIT 9312)
Taxonomic identifieri74546 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesProchloraceaeProchlorococcus
Proteomesi
  • UP000002715 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000554381 – 14350S ribosomal protein L13Add BLAST143

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi74546.PMT9312_1625.

Structurei

3D structure databases

ProteinModelPortaliQ318L0.
SMRiQ318L0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.

Phylogenomic databases

eggNOGiENOG4108UM5. Bacteria.
COG0102. LUCA.
HOGENOMiHOG000225286.
KOiK02871.
OMAiVLMGKHK.
OrthoDBiPOG091H013T.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiView protein in InterPro
IPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR036899. Ribosomal_L13_sf.
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiView protein in Pfam
PF00572. Ribosomal_L13. 1 hit.
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00783. RIBOSOMAL_L13. 1 hit.

Sequencei

Sequence statusi: Complete.

Q318L0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKTITPSLE TIERNWFLVD AKDKTLGRLA TEIATVLRGK NKPTFTPHLD
60 70 80 90 100
TGDFVIVVNA EKIEVSGKKA SQKLYRRHSG RPGGMKTEKF ESLQERIPER
110 120 130 140
IIEQAVKGML PHNSLGRQQF KKLKVYKGAD HPHAAQNPVL LNS
Length:143
Mass (Da):16,113
Last modified:December 6, 2005 - v1
Checksum:iF46FDD4D9E9C9E12
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000111 Genomic DNA. Translation: ABB50685.1.
RefSeqiWP_011377167.1. NC_007577.1.

Genome annotation databases

EnsemblBacteriaiABB50685; ABB50685; PMT9312_1625.
KEGGipmi:PMT9312_1625.

Similar proteinsi

Entry informationi

Entry nameiRL13_PROM9
AccessioniPrimary (citable) accession number: Q318L0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: December 6, 2005
Last modified: October 25, 2017
This is version 78 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families