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Q31796

- ACCD_ANTFO

UniProt

Q31796 - ACCD_ANTFO

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Protein
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic
Gene
accD
Organism
Anthoceros formosae (Hornwort)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO2 group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA By similarity.UniRule annotation

Catalytic activityi

ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA.UniRule annotation

Cofactori

Binds 1 zinc ion per subunit By similarity.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi51 – 511Zinc By similarity
Metal bindingi54 – 541Zinc By similarity
Metal bindingi70 – 701Zinc By similarity
Metal bindingi73 – 731Zinc By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri51 – 7323C4-type By similarity
Add
BLAST

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. acetyl-CoA carboxylase activity Source: UniProtKB-HAMAP
  3. zinc ion binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. fatty acid biosynthetic process Source: UniProtKB-HAMAP
  2. malonyl-CoA biosynthetic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

Ligase

Keywords - Biological processi

Fatty acid biosynthesis, Fatty acid metabolism, Lipid biosynthesis, Lipid metabolism

Keywords - Ligandi

ATP-binding, Metal-binding, Nucleotide-binding, Zinc

Enzyme and pathway databases

UniPathwayiUPA00655; UER00711.

Names & Taxonomyi

Protein namesi
Recommended name:
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic (EC:6.4.1.2)
Short name:
ACCase subunit beta
Short name:
Acetyl-CoA carboxylase carboxyltransferase subunit beta
Gene namesi
Name:accD
Encoded oniPlastid; Chloroplast
OrganismiAnthoceros formosae (Hornwort)
Taxonomic identifieri48387 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaAnthocerotophytaAnthocerotopsidaAnthocerotidaeAnthocerotalesAnthocerotaceaeAnthoceros

Subcellular locationi

Plastidchloroplast stroma By similarity UniRule annotation

GO - Cellular componenti

  1. acetyl-CoA carboxylase complex Source: InterPro
  2. chloroplast stroma Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 313313Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplasticUniRule annotation
PRO_0000199779Add
BLAST

Interactioni

Subunit structurei

Acetyl-CoA carboxylase is a heterohexamer composed of biotin carboxyl carrier protein, biotin carboxylase and 2 subunits each of ACCase subunit alpha and ACCase plastid-coded subunit beta (accD) By similarity.

Structurei

3D structure databases

ProteinModelPortaliQ31796.

Family & Domainsi

Sequence similaritiesi

Belongs to the AccD/PCCB family.

Keywords - Domaini

Zinc-finger

Family and domain databases

Gene3Di3.90.226.10. 1 hit.
HAMAPiMF_01395. AcetylCoA_CT_beta.
InterProiIPR000438. Acetyl_CoA_COase_Trfase_b_su.
IPR000022. Carboxyl_trans.
IPR029045. ClpP/crotonase-like_dom.
IPR011762. COA_CT_N.
[Graphical view]
PfamiPF01039. Carboxyl_trans. 1 hit.
[Graphical view]
PRINTSiPR01070. ACCCTRFRASEB.
SUPFAMiSSF52096. SSF52096. 1 hit.
TIGRFAMsiTIGR00515. accD. 1 hit.
PROSITEiPS50980. COA_CT_NTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q31796-1 [UniParc]FASTAAdd to Basket

« Hide

MSLMNWFEDR RKFSGLIGAF IEKATKGYIL SERRKDRHIK IDTTKGLWTR    50
CDNCENMLYI RFLRQNKRIC EECGYHLQMS STERIESLID RGTWHPMDED 100
MVARDALKFS DEDSYKNRVL FYQKRTGLTD AIQTGIGKLN GIPIALGVMD 150
FQFMGGSMGS VVGEKITRLI EYGTRESMPV IIVCSSGGAR MQEGTLSLMQ 200
MAKISAVLQI HQAQKKLLYI AILTYPTTGG VTASFGMLGD VIIAEPKAYI 250
AFAGKRVIEQ TLRQKIPDGS QVAESLFDHG LLDLIVPRNL LRGVLSEIFE 300
LYSSAPCRRS NNS 313
Length:313
Mass (Da):35,272
Last modified:February 28, 2003 - v2
Checksum:i6881B7B5FF780126
GO

RNA editingi

The nonsense codons at positions 50, 78, 104, 260 and 264 are modified to sense codons.2 Publications

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB086179 Genomic DNA. Translation: BAC55358.1.
AB087450 mRNA. Translation: BAC55454.1.
D43695 Genomic DNA. Translation: BAA07797.1. Sequence problems.
PIRiS71147.
RefSeqiNP_777422.1. NC_004543.1.

Genome annotation databases

GeneIDi2553479.

Keywords - Coding sequence diversityi

RNA editing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB086179 Genomic DNA. Translation: BAC55358.1 .
AB087450 mRNA. Translation: BAC55454.1 .
D43695 Genomic DNA. Translation: BAA07797.1 . Sequence problems.
PIRi S71147.
RefSeqi NP_777422.1. NC_004543.1.

3D structure databases

ProteinModelPortali Q31796.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 2553479.

Enzyme and pathway databases

UniPathwayi UPA00655 ; UER00711 .

Family and domain databases

Gene3Di 3.90.226.10. 1 hit.
HAMAPi MF_01395. AcetylCoA_CT_beta.
InterProi IPR000438. Acetyl_CoA_COase_Trfase_b_su.
IPR000022. Carboxyl_trans.
IPR029045. ClpP/crotonase-like_dom.
IPR011762. COA_CT_N.
[Graphical view ]
Pfami PF01039. Carboxyl_trans. 1 hit.
[Graphical view ]
PRINTSi PR01070. ACCCTRFRASEB.
SUPFAMi SSF52096. SSF52096. 1 hit.
TIGRFAMsi TIGR00515. accD. 1 hit.
PROSITEi PS50980. COA_CT_NTER. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The complete nucleotide sequence of the hornwort (Anthoceros formosae) chloroplast genome: insight into the earliest land plants."
    Kugita M., Kaneko A., Yamamoto Y., Takeya Y., Matsumoto T., Yoshinaga K.
    Nucleic Acids Res. 31:716-721(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], RNA EDITING.
  2. "RNA editing in hornwort chloroplasts makes more than half the genes functional."
    Kugita M., Yamamoto Y., Fujikawa T., Matsumoto T., Yoshinaga K.
    Nucleic Acids Res. 31:2417-2423(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], RNA EDITING.
    Tissue: Thallus.
  3. "Extensive RNA editing of U to C in addition to C to U substitution in the rbcL transcripts of hornwort chloroplasts and the origin of RNA editing in green plants."
    Yoshinaga K., Iinuma H., Masuzawa T., Ueda K.
    Nucleic Acids Res. 24:1008-1014(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-91.
    Tissue: Thallus.

Entry informationi

Entry nameiACCD_ANTFO
AccessioniPrimary (citable) accession number: Q31796
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 28, 2003
Last modified: June 11, 2014
This is version 77 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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