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Protein

Probable glycine dehydrogenase (decarboxylating) subunit 1

Gene

gcvPA

Organism
Desulfovibrio alaskensis (strain G20) (Desulfovibrio desulfuricans (strain G20))
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO2 is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.UniRule annotation

Catalytic activityi

Glycine + [glycine-cleavage complex H protein]-N6-lipoyl-L-lysine = [glycine-cleavage complex H protein]-S-aminomethyl-N6-dihydrolipoyl-L-lysine + CO2.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionOxidoreductase

Enzyme and pathway databases

BioCyciDALA207559:G1G52-1568-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Probable glycine dehydrogenase (decarboxylating) subunit 1UniRule annotation (EC:1.4.4.2UniRule annotation)
Alternative name(s):
Glycine cleavage system P-protein subunit 1UniRule annotation
Glycine decarboxylase subunit 1UniRule annotation
Glycine dehydrogenase (aminomethyl-transferring) subunit 1UniRule annotation
Gene namesi
Name:gcvPAUniRule annotation
Ordered Locus Names:Dde_1692
OrganismiDesulfovibrio alaskensis (strain G20) (Desulfovibrio desulfuricans (strain G20))
Taxonomic identifieri207559 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
Proteomesi
  • UP000002710 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000456431 – 443Probable glycine dehydrogenase (decarboxylating) subunit 1Add BLAST443

Interactioni

Subunit structurei

The glycine cleavage system is composed of four proteins: P, T, L and H. In this organism, the P 'protein' is a heterodimer of two subunits.UniRule annotation

Protein-protein interaction databases

STRINGi207559.Dde_1692

Structurei

3D structure databases

ProteinModelPortaliQ311A7
SMRiQ311A7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the GcvP family. N-terminal subunit subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4107QK8 Bacteria
COG0403 LUCA
HOGENOMiHOG000132025
KOiK00282
OMAiMYDGASA
OrthoDBiPOG091H0JKN

Family and domain databases

Gene3Di3.40.640.10, 1 hit
3.90.1150.10, 2 hits
HAMAPiMF_00712 GcvPA, 1 hit
InterProiView protein in InterPro
IPR023010 GcvPA
IPR020581 GDC_P
IPR015424 PyrdxlP-dep_Trfase
IPR015422 PyrdxlP-dep_Trfase_dom1
IPR015421 PyrdxlP-dep_Trfase_major
PANTHERiPTHR42806 PTHR42806, 1 hit
PfamiView protein in Pfam
PF02347 GDC-P, 1 hit
PIRSFiPIRSF006815 GcvPA, 1 hit
SUPFAMiSSF53383 SSF53383, 1 hit

Sequencei

Sequence statusi: Complete.

Q311A7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPYTPHTPEE IRQMLDVIGV KSIDDLFAEI PPEMQPRSFD IPEGMSEMEV
60 70 80 90 100
CARIQRMAAK NRIDLVSYLG AGFYDHHIPK AVDNLVSRGE FYTAYTPYQP
110 120 130 140 150
EASQGTLQAI FEYQTAVCRL MEMEVANASV YDGGSAIFEA MMMAARATRR
160 170 180 190 200
SKLVIDEALS PIYRTMLASY TSNLNMELVT VAHNEGRSDK QALMDAVDDK
210 220 230 240 250
CAAVVVQNPN FFGAVDDFTE LFTHARSCNA LGVISVYPVM QSVLKTPGEM
260 270 280 290 300
GADIAVADGQ SLGMPLSFGG PYLGIMTCTK KLARQIPGRI AGRTKDVDGK
310 320 330 340 350
TGYVLTLQAR EQHIRRAKAT SNICSNQALC ALRAIIHMCL TGPEGLVRTA
360 370 380 390 400
ELSMERAHYA ADRLTALPGV SLLHDAPFCN EFALRLPVSA YDVVDRLVNH
410 420 430 440
GVVPGFPLGG YYAGMDDVLL VACTEKHSFE QIGIMAELVG GML
Length:443
Mass (Da):48,396
Last modified:December 6, 2005 - v1
Checksum:i9896B212D8282431
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000112 Genomic DNA Translation: ABB38489.1
RefSeqiWP_011367635.1, NC_007519.1

Genome annotation databases

EnsemblBacteriaiABB38489; ABB38489; Dde_1692
KEGGidde:Dde_1692

Similar proteinsi

Entry informationi

Entry nameiGCSPA_DESAG
AccessioniPrimary (citable) accession number: Q311A7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: December 6, 2005
Last modified: April 25, 2018
This is version 78 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health