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Q31064 (Q31064_PIG) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 72. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:SLA-DR-alpha EMBL AAA31074.1
OrganismSus scrofa (Pig) EMBL AAA31074.1
Taxonomic identifier9823 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus

Protein attributes

Sequence length253 AA.
Sequence statusFragment.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the MHC class II family. RuleBase RU004238

Contains Ig-like C1-type (immunoglobulin-like) domain. SAAS SAAS014745

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide‹1 – 24›24 Potential EMBL AAA31074.1
Chain25 – ›253›229MHC class II DR-alpha EMBL AAA31074.1
PRO_5000143669

Experimental info

Non-terminal residue11 EMBL AAA31074.1
Non-terminal residue2531 EMBL AAA31074.1

Sequences

Sequence LengthMass (Da)Tools
Q31064 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 4B63811D5A88A167

FASTA25328,483
        10         20         30         40         50         60 
ALPTLIEASK EKMTILGVPV LGFVITILNL QKSWAIVENH VIIQAEFYLS PDKSGEFMFD 

        70         80         90        100        110        120 
FDGDEIFHVD MEKRETVWRL EEFGHFASFE AQGALANIAV DKANLEILIK RSNNTPNTNV 

       130        140        150        160        170        180 
PPEVTVLSDK PVELGEPNIL ICFIDKFSPP VVNVTWLRNG SPVTRGVSET VFLPREDHLF 

       190        200        210        220        230        240 
RKFHYLPFMP STEDVYDCQV EHWGLDKPLL KHWEFEAQTP LPETTENTVC ALGLIVALVG 

       250 
IIVGTVLIIK GVR 

« Hide

References

[1]"Structure and expression of class II alpha genes in miniature swine."
Hirsch F., Germana S., Gustafsson K., Pratt K., Sachs D.H., Leguern C.
J. Immunol. 149:841-846(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Minnesota miniature swine EMBL AAA31074.1.
Tissue: Spleen and blood EMBL AAA31074.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M92445 mRNA. Translation: AAA31074.1.
UniGeneSsc.222.

3D structure databases

ProteinModelPortalQ31064.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Phylogenomic databases

HOGENOMHOG000112076.
HOVERGENHBG006862.

Family and domain databases

Gene3D2.60.40.10. 1 hit.
3.10.320.10. 1 hit.
InterProIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
IPR011162. MHC_I/II-like_Ag-recog.
IPR014745. MHC_II_a/b_N.
IPR001003. MHC_II_a_N.
[Graphical view]
PfamPF07654. C1-set. 1 hit.
PF00993. MHC_II_alpha. 1 hit.
[Graphical view]
SMARTSM00407. IGc1. 1 hit.
SM00920. MHC_II_alpha. 1 hit.
[Graphical view]
SUPFAMSSF54452. SSF54452. 1 hit.
PROSITEPS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ31064_PIG
AccessionPrimary (citable) accession number: Q31064
Entry history
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: February 19, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)