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Q30VM7 (Q30VM7_DESDG) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Isocitrate dehydrogenase [NADP] RuleBase RU004446
EC=1.1.1.42 RuleBase RU004446
Gene names
Ordered Locus Names:Dde_3476
OrganismDesulfovibrio desulfuricans (strain G20) [Complete proteome] [HAMAP]
Taxonomic identifier207559 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Deltaproteobacteria › Desulfovibrionales › Desulfovibrionaceae › Desulfovibrio ›

Protein attributes

Sequence length382 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH. RuleBase RU004446

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. RuleBase RU004446

Sequence similarities

Belongs to the isocitrate and isopropylmalate dehydrogenases family. RuleBase RU004443

Sequences

Sequence LengthMass (Da)Tools
Q30VM7 [UniParc].

Last modified December 6, 2005. Version 1.
Checksum: 5ECA1783E7A269A3

FASTA38241,273
        10         20         30         40         50         60 
MRKTVYFIEG DGIGPEVWNA ARPVIDKAVE LAYGNGRSLE WKELLAGEKA YAETGTYLPQ 

        70         80         90        100        110        120 
ETLDTLAGAE LAIKGPLGTP VGKGFRSLNV TMRQTLDLYA CIRPIRYFEG IESPVKHPER 

       130        140        150        160        170        180 
VNMVVFRENT EDVYAGIEYK ADTDEARKLI AFLRDELGAN VDERCAVGIK PMSEKGSKRL 

       190        200        210        220        230        240 
VRRAMDFALA QGLPSVTLVH KGNIMKFTEG GFRQWGYELA HDEYAGRAVT EAQAAAGETG 

       250        260        270        280        290        300 
LVVKDRIADA MFQEVLIRPE QYSVVATSNL NGDYISDALA AQVGGLGLAP GVNMSDTLAF 

       310        320        330        340        350        360 
FEATHGTAPT IAGKDMANPG SLILCGGMLL EHLGWHEAAT RIHTAMNTVI GNRTVTVDLA 

       370        380 
SQMQGASTVG CRQFGELLGA AL

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References

[1]"Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20."
Hauser L.J., Land M.L., Brown S.D., Larimer F., Keller K.L., Rapp-Giles B.J., Price M.N., Lin M., Bruce D.C., Detter J.C., Tapia R., Han C.S., Goodwin L.A., Cheng J.F., Pitluck S., Copeland A., Lucas S., Nolan M. expand/collapse author list , Lapidus A.L., Palumbo A.V., Wall J.D.
J. Bacteriol. 193:4268-4269(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: G20.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000112 Genomic DNA. Translation: ABB40269.1.
RefSeqYP_389964.1. NC_007519.1.

3D structure databases

ProteinModelPortalQ30VM7.
SMRQ30VM7. Positions 2-378.
ModBaseSearch...

Protein-protein interaction databases

STRING207559.Dde_3476.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABB40269; ABB40269; Dde_3476.
GeneID3758454.
KEGGdde:Dde_3476.
PATRIC21745781. VBIDesDes50040_3372.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0538.
HOGENOMHOG000021113.
KOK00031.
OMANVRPINN.
ProtClustDBCLSK704645.

Enzyme and pathway databases

BioCycDALA207559:GH1L-3097-MONOMER.

Family and domain databases

Gene3D3.40.718.10. 1 hit.
InterProIPR019818. IsoCit/isopropylmalate_DH_CS.
IPR001804. Isocitrate/isopropylmalate_DH.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PANTHERPTHR11835. PTHR11835. 1 hit.
PfamPF00180. Iso_dh. 1 hit.
[Graphical view]
PROSITEPS00470. IDH_IMDH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ30VM7_DESDG
AccessionPrimary (citable) accession number: Q30VM7
Entry history
Integrated into UniProtKB/TrEMBL: December 6, 2005
Last sequence update: December 6, 2005
Last modified: May 1, 2013
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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