Unreviewed, UniProtKB/TrEMBL Q2YS36 (Q2YS36_RAT)

Names and origin

Protein names

Submitted name:
    Voltage-dependent P/Q-type calcium channel alpha-1A subunit EMBL CAJ09866.1

Gene names

Name:

Cacna1a EMBL CAJ09866.1 RGD 2244

Organism

Rattus norvegicus (Rat) EMBL CAJ09866.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	165 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level.

Ontologies

Keywords
Biological process	Ion transport Transport
Cellular component	Membrane
Domain	Transmembrane RuleBase RU003378V0
Molecular function	Ionic channel RuleBase RU003378V0
Gene Ontology (GO)
Biological process	calcium ion transport Inferred from direct assay. Source: RGD synaptic transmission Inferred from mutant phenotype. Source: RGD transmembrane transport Inferred from electronic annotation. Source: InterPro
Cellular component	perikaryon Inferred from direct assay. Source: RGD voltage-gated calcium channel complex Inferred from direct assay. Source: RGD
Molecular function	voltage-gated calcium channel activity Inferred from direct assay. Source: RGD
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL CAJ09866.1
	Non-terminal residue	165	1	EMBL CAJ09866.1

Sequences

	Sequence		Length	Mass (Da)
	Q2YS36-1 [UniParc]. Last modified December 20, 2005. Version 1. Checksum: E31F4E37A19732BF	FASTA	165	19,095
	10 20 30 40 50 60 FVVFPFFFVN IFVALIIITF QEQGDKMMEE YSLEKNERAC IDFAISAKPL TRHMPQNKQS 70 80 90 100 110 120 FQYRMWQFVV SPPFEYTIMA MIALNTIVLM MKFYGASVAY ENALRVFNIV FTSLFSLECV 130 140 150 160 LKVMAFGILN YFRDAWNIFD FVTVLGSITD ILVTEFGNPV GVTSF

References

[1]

"Alternative splicing generates a smaller assortment of CaV2.1 transcripts in cerebellar Purkinje cells than in the cerebellum." Kanumilli S., Tringham E.W., Payne C.E., Dupere J.R., Venkateswarlu K., Usowicz M.M. Physiol. Genomics (Online) 24:86-96(2006) [PubMed: 16278278] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Wistar EMBL CAJ09866.1. Tissue: Cerebellum EMBL CAJ09866.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM040231 mRNA. Translation: CAJ09866.1.
IPI	IPI00211870.
UniGene	Rn.87769
3D structure databases
ModBase	Search...
Phylogenomic databases
HOVERGEN	Q2YS36.
Gene expression databases
Genevestigator	Q2YS36.
Family and domain databases
InterPro	IPR005821. Ion_trans. IPR005448. VDCC_P/Q_a1su. [Graphical view]
PANTHER	PTHR10037:SF59. PQVDCCAlpha1. 1 hit.
Pfam	PF00520. Ion_trans. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q2YS36_RAT

Accession

Primary (citable) accession number: Q2YS36

Entry history

Integrated into UniProtKB/TrEMBL:	December 20, 2005
Last sequence update:	December 20, 2005
Last modified:	January 19, 2010
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)