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Q2YRB0 (RL6_BRUA2) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L6
Gene names
Name:rplF
Ordered Locus Names:BAB1_1240
OrganismBrucella abortus (strain 2308) [Complete proteome] [HAMAP]
Taxonomic identifier359391 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella

Protein attributes

Sequence length177 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center By similarity. HAMAP-Rule MF_01365

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01365

Sequence similarities

Belongs to the ribosomal protein L6P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 17717750S ribosomal protein L6 HAMAP-Rule MF_01365
PRO_0000265227

Sequences

Sequence LengthMass (Da)Tools
Q2YRB0 [UniParc].

Last modified February 7, 2006. Version 1.
Checksum: 954B9A9340620F35

FASTA17719,138
        10         20         30         40         50         60 
MSRIGKKPVP VPAGVTGSVE GQTVKAKGAK GELSFVVHDE VLVKMEDGAV RVDPRDQSKE 

        70         80         90        100        110        120 
ARSKWGMSRT MISNIFVGVK DGFEKKLEIS GVGYRAAMQG KNLQLSLGFS HEVVYDVPAG 

       130        140        150        160        170 
ITVAVPKPTE IVVTGIDKQQ VGQVAAEIRE YRGPEPYKGK GVKYAGEKIV RKEGKKK 

« Hide

References

[1]"Whole-genome analyses of speciation events in pathogenic Brucellae."
Chain P.S., Comerci D.J., Tolmasky M.E., Larimer F.W., Malfatti S.A., Vergez L.M., Aguero F., Land M.L., Ugalde R.A., Garcia E.
Infect. Immun. 73:8353-8361(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 2308.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM040264 Genomic DNA. Translation: CAJ11196.1.
RefSeqYP_414626.1. NC_007618.1.

3D structure databases

ProteinModelPortalQ2YRB0.
SMRQ2YRB0. Positions 2-177.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING359391.BAB1_1240.

Proteomic databases

PRIDEQ2YRB0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAJ11196; CAJ11196; BAB1_1240.
GeneID3788915.
KEGGbmf:BAB1_1240.
PATRIC17845439. VBIBruMel86222_1289.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0097.
HOGENOMHOG000039903.
KOK02933.
OMALIANMVE.
OrthoDBEOG67DPRD.
ProtClustDBPRK05498.

Enzyme and pathway databases

BioCycBABO359391:GKDV-1262-MONOMER.
BMEL359391:GJOQ-1262-MONOMER.

Family and domain databases

Gene3D3.90.930.12. 2 hits.
HAMAPMF_01365_B. Ribosomal_L6_B.
InterProIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
IPR002358. Ribosomal_L6_CS.
[Graphical view]
PANTHERPTHR11655. PTHR11655. 1 hit.
PTHR11655:SF6. PTHR11655:SF6. 1 hit.
PfamPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSPR00059. RIBOSOMALL6.
SUPFAMSSF56053. SSF56053. 2 hits.
TIGRFAMsTIGR03654. L6_bact. 1 hit.
PROSITEPS00525. RIBOSOMAL_L6_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL6_BRUA2
AccessionPrimary (citable) accession number: Q2YRB0
Entry history
Integrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: February 7, 2006
Last modified: February 19, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

Brucella abortus strain 2308

Brucella abortus (strain 2308): entries and gene names