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Protein

30S ribosomal protein S3

Gene

rpsC

Organism
Brucella abortus (strain 2308)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.UniRule annotation

GO - Molecular functioni

  1. mRNA binding Source: UniProtKB-HAMAP
  2. rRNA binding Source: UniProtKB-HAMAP
  3. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciBABO359391:GKDV-1271-MONOMER.
BMEL359391:GJOQ-1271-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S3UniRule annotation
Gene namesi
Name:rpsCUniRule annotation
Ordered Locus Names:BAB1_1249
OrganismiBrucella abortus (strain 2308)
Taxonomic identifieri359391 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
ProteomesiUP000002719: Chromosome I

Subcellular locationi

GO - Cellular componenti

  1. small ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 23623630S ribosomal protein S3PRO_0000230683Add
BLAST

Proteomic databases

PRIDEiQ2YRA1.

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14.UniRule annotation

Protein-protein interaction databases

STRINGi359391.BAB1_1249.

Structurei

3D structure databases

ProteinModelPortaliQ2YRA1.
SMRiQ2YRA1. Positions 2-207.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini39 – 10769KH type-2UniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ribosomal protein S3P family.UniRule annotation
Contains 1 KH type-2 domain.UniRule annotation

Phylogenomic databases

eggNOGiCOG0092.
HOGENOMiHOG000210610.
KOiK02982.
OMAiMGQKTNP.
OrthoDBiEOG6K13X3.

Family and domain databases

Gene3Di3.30.1140.32. 1 hit.
3.30.300.20. 1 hit.
HAMAPiMF_01309_B. Ribosomal_S3_B.
InterProiIPR004087. KH_dom.
IPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR005704. Ribosomal_S3_bac.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
[Graphical view]
PfamiPF07650. KH_2. 1 hit.
PF00189. Ribosomal_S3_C. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 1 hit.
[Graphical view]
SUPFAMiSSF54814. SSF54814. 1 hit.
SSF54821. SSF54821. 1 hit.
TIGRFAMsiTIGR01009. rpsC_bact. 1 hit.
PROSITEiPS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2YRA1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGQKINPIGL RLGINRTWDS RWYANTGEYG KLLHEDVKIR EFLTEELKQA
60 70 80 90 100
AISKIVIERP HKKCRVTIHS ARPGIIIGKK GADIEKLRKK LSEMTNADTS
110 120 130 140 150
LNIVEVRKPE VDATLIAQSI AQQLERRVAF RRAMKRAVQS AMRLGAEGIR
160 170 180 190 200
INCSGRLGGA EIARMEWYRE GRVPLHTLRA DIDYGTAEAK TAYGICGVKV
210 220 230
WVFKGEILEH DPMASERRAV EGDNQGSSSN RRRENA
Length:236
Mass (Da):26,604
Last modified:February 7, 2006 - v1
Checksum:iED11EE4CDCBC20CC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM040264 Genomic DNA. Translation: CAJ11205.1.
RefSeqiYP_414635.1. NC_007618.1.

Genome annotation databases

EnsemblBacteriaiCAJ11205; CAJ11205; BAB1_1249.
GeneIDi3788941.
KEGGibmf:BAB1_1249.
PATRICi17845457. VBIBruMel86222_1298.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM040264 Genomic DNA. Translation: CAJ11205.1.
RefSeqiYP_414635.1. NC_007618.1.

3D structure databases

ProteinModelPortaliQ2YRA1.
SMRiQ2YRA1. Positions 2-207.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi359391.BAB1_1249.

Proteomic databases

PRIDEiQ2YRA1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ11205; CAJ11205; BAB1_1249.
GeneIDi3788941.
KEGGibmf:BAB1_1249.
PATRICi17845457. VBIBruMel86222_1298.

Phylogenomic databases

eggNOGiCOG0092.
HOGENOMiHOG000210610.
KOiK02982.
OMAiMGQKTNP.
OrthoDBiEOG6K13X3.

Enzyme and pathway databases

BioCyciBABO359391:GKDV-1271-MONOMER.
BMEL359391:GJOQ-1271-MONOMER.

Family and domain databases

Gene3Di3.30.1140.32. 1 hit.
3.30.300.20. 1 hit.
HAMAPiMF_01309_B. Ribosomal_S3_B.
InterProiIPR004087. KH_dom.
IPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR005704. Ribosomal_S3_bac.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
[Graphical view]
PfamiPF07650. KH_2. 1 hit.
PF00189. Ribosomal_S3_C. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 1 hit.
[Graphical view]
SUPFAMiSSF54814. SSF54814. 1 hit.
SSF54821. SSF54821. 1 hit.
TIGRFAMsiTIGR01009. rpsC_bact. 1 hit.
PROSITEiPS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 2308.

Entry informationi

Entry nameiRS3_BRUA2
AccessioniPrimary (citable) accession number: Q2YRA1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 4, 2006
Last sequence update: February 7, 2006
Last modified: January 7, 2015
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Brucella abortus strain 2308
    Brucella abortus (strain 2308): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.