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Q2YQS6

- YBEY_BRUA2

UniProt

Q2YQS6 - YBEY_BRUA2

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Protein
Endoribonuclease YbeY
Gene
ybeY, BAB1_2156
Organism
Brucella abortus (strain 2308)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA By similarity.UniRule annotation

Cofactori

Binds 1 zinc ion By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi122 – 1221Zinc; catalytic By similarity
Metal bindingi126 – 1261Zinc; catalytic By similarity
Metal bindingi132 – 1321Zinc; catalytic By similarity

GO - Molecular functioni

  1. endoribonuclease activity Source: UniProtKB-HAMAP
  2. metalloendopeptidase activity Source: InterPro
  3. zinc ion binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. rRNA processing Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Endonuclease, Hydrolase, Nuclease

Keywords - Biological processi

Ribosome biogenesis, rRNA processing

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciBABO359391:GKDV-2210-MONOMER.
BMEL359391:GJOQ-2210-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Endoribonuclease YbeY (EC:3.1.-.-)
Gene namesi
Name:ybeY
Ordered Locus Names:BAB1_2156
OrganismiBrucella abortus (strain 2308)
Taxonomic identifieri359391 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
ProteomesiUP000002719: Chromosome I

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 168168Endoribonuclease YbeYUniRule annotation
PRO_0000284170Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi359391.BAB1_2156.

Structurei

3D structure databases

ProteinModelPortaliQ2YQS6.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0319.
HOGENOMiHOG000132869.
KOiK07042.
OrthoDBiEOG680X6D.

Family and domain databases

Gene3Di3.40.390.30. 1 hit.
HAMAPiMF_00009. Endoribonucl_YbeY.
InterProiIPR023091. MetalPrtase_cat_dom_prd.
IPR002036. YbeY.
IPR020549. YbeY_CS.
[Graphical view]
PfamiPF02130. UPF0054. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00043. TIGR00043. 1 hit.
PROSITEiPS01306. UPF0054. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2YQS6-1 [UniParc]FASTAAdd to Basket

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MSDNAIHIDI MIEAGNWPDE ASLESLVSKS VAAAWNNLGL KSATSELSVV    50
FTDDASIQLL NGEWRGKDKP TNVLSFPAFP VKAGSQPGPM LGDIVIARET 100
VEREAKEEGK PIENHLSHLV VHGFLHLLGY DHETDEEAEV MEAREREILH 150
ALAIPDPYAV SDEDINND 168
Length:168
Mass (Da):18,423
Last modified:April 17, 2007 - v2
Checksum:iBC6B2B7F0F074795
GO

Sequence cautioni

The sequence CAJ12112.1 differs from that shown. Reason: Erroneous initiation.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM040264 Genomic DNA. Translation: CAJ12112.1. Different initiation.
RefSeqiYP_415476.1. NC_007618.1.

Genome annotation databases

EnsemblBacteriaiCAJ12112; CAJ12112; BAB1_2156.
GeneIDi3788574.
KEGGibmf:BAB1_2156.
PATRICi17847419. VBIBruMel86222_2245.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM040264 Genomic DNA. Translation: CAJ12112.1 . Different initiation.
RefSeqi YP_415476.1. NC_007618.1.

3D structure databases

ProteinModelPortali Q2YQS6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 359391.BAB1_2156.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAJ12112 ; CAJ12112 ; BAB1_2156 .
GeneIDi 3788574.
KEGGi bmf:BAB1_2156.
PATRICi 17847419. VBIBruMel86222_2245.

Phylogenomic databases

eggNOGi COG0319.
HOGENOMi HOG000132869.
KOi K07042.
OrthoDBi EOG680X6D.

Enzyme and pathway databases

BioCyci BABO359391:GKDV-2210-MONOMER.
BMEL359391:GJOQ-2210-MONOMER.

Family and domain databases

Gene3Di 3.40.390.30. 1 hit.
HAMAPi MF_00009. Endoribonucl_YbeY.
InterProi IPR023091. MetalPrtase_cat_dom_prd.
IPR002036. YbeY.
IPR020549. YbeY_CS.
[Graphical view ]
Pfami PF02130. UPF0054. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00043. TIGR00043. 1 hit.
PROSITEi PS01306. UPF0054. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 2308.

Entry informationi

Entry nameiYBEY_BRUA2
AccessioniPrimary (citable) accession number: Q2YQS6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 17, 2007
Last sequence update: April 17, 2007
Last modified: May 14, 2014
This is version 51 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Brucella abortus strain 2308
    Brucella abortus (strain 2308): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi