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Q2YQS6

- YBEY_BRUA2

UniProt

Q2YQS6 - YBEY_BRUA2

Protein

Endoribonuclease YbeY

Gene

ybeY

Organism
Brucella abortus (strain 2308)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 52 (01 Oct 2014)
      Sequence version 2 (17 Apr 2007)
      Previous versions | rss
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    Functioni

    Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.UniRule annotation

    Cofactori

    Binds 1 zinc ion.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi122 – 1221Zinc; catalyticUniRule annotation
    Metal bindingi126 – 1261Zinc; catalyticUniRule annotation
    Metal bindingi132 – 1321Zinc; catalyticUniRule annotation

    GO - Molecular functioni

    1. endoribonuclease activity Source: UniProtKB-HAMAP
    2. metalloendopeptidase activity Source: InterPro
    3. zinc ion binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. rRNA processing Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Endonuclease, Hydrolase, Nuclease

    Keywords - Biological processi

    Ribosome biogenesis, rRNA processing

    Keywords - Ligandi

    Metal-binding, Zinc

    Enzyme and pathway databases

    BioCyciBABO359391:GKDV-2210-MONOMER.
    BMEL359391:GJOQ-2210-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Endoribonuclease YbeYUniRule annotation (EC:3.1.-.-UniRule annotation)
    Gene namesi
    Name:ybeYUniRule annotation
    Ordered Locus Names:BAB1_2156
    OrganismiBrucella abortus (strain 2308)
    Taxonomic identifieri359391 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
    ProteomesiUP000002719: Chromosome I

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 168168Endoribonuclease YbeYPRO_0000284170Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi359391.BAB1_2156.

    Structurei

    3D structure databases

    ProteinModelPortaliQ2YQS6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the endoribonuclease YbeY family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0319.
    HOGENOMiHOG000132869.
    KOiK07042.
    OrthoDBiEOG680X6D.

    Family and domain databases

    Gene3Di3.40.390.30. 1 hit.
    HAMAPiMF_00009. Endoribonucl_YbeY.
    InterProiIPR023091. MetalPrtase_cat_dom_prd.
    IPR002036. YbeY.
    IPR020549. YbeY_CS.
    [Graphical view]
    PfamiPF02130. UPF0054. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00043. TIGR00043. 1 hit.
    PROSITEiPS01306. UPF0054. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q2YQS6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSDNAIHIDI MIEAGNWPDE ASLESLVSKS VAAAWNNLGL KSATSELSVV    50
    FTDDASIQLL NGEWRGKDKP TNVLSFPAFP VKAGSQPGPM LGDIVIARET 100
    VEREAKEEGK PIENHLSHLV VHGFLHLLGY DHETDEEAEV MEAREREILH 150
    ALAIPDPYAV SDEDINND 168
    Length:168
    Mass (Da):18,423
    Last modified:April 17, 2007 - v2
    Checksum:iBC6B2B7F0F074795
    GO

    Sequence cautioni

    The sequence CAJ12112.1 differs from that shown. Reason: Erroneous initiation.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM040264 Genomic DNA. Translation: CAJ12112.1. Different initiation.
    RefSeqiYP_415476.1. NC_007618.1.

    Genome annotation databases

    EnsemblBacteriaiCAJ12112; CAJ12112; BAB1_2156.
    GeneIDi3788574.
    KEGGibmf:BAB1_2156.
    PATRICi17847419. VBIBruMel86222_2245.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM040264 Genomic DNA. Translation: CAJ12112.1 . Different initiation.
    RefSeqi YP_415476.1. NC_007618.1.

    3D structure databases

    ProteinModelPortali Q2YQS6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 359391.BAB1_2156.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAJ12112 ; CAJ12112 ; BAB1_2156 .
    GeneIDi 3788574.
    KEGGi bmf:BAB1_2156.
    PATRICi 17847419. VBIBruMel86222_2245.

    Phylogenomic databases

    eggNOGi COG0319.
    HOGENOMi HOG000132869.
    KOi K07042.
    OrthoDBi EOG680X6D.

    Enzyme and pathway databases

    BioCyci BABO359391:GKDV-2210-MONOMER.
    BMEL359391:GJOQ-2210-MONOMER.

    Family and domain databases

    Gene3Di 3.40.390.30. 1 hit.
    HAMAPi MF_00009. Endoribonucl_YbeY.
    InterProi IPR023091. MetalPrtase_cat_dom_prd.
    IPR002036. YbeY.
    IPR020549. YbeY_CS.
    [Graphical view ]
    Pfami PF02130. UPF0054. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00043. TIGR00043. 1 hit.
    PROSITEi PS01306. UPF0054. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 2308.

    Entry informationi

    Entry nameiYBEY_BRUA2
    AccessioniPrimary (citable) accession number: Q2YQS6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 17, 2007
    Last sequence update: April 17, 2007
    Last modified: October 1, 2014
    This is version 52 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Brucella abortus strain 2308
      Brucella abortus (strain 2308): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3