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Q2YND8

- RL13_BRUA2

UniProt

Q2YND8 - RL13_BRUA2

Protein

50S ribosomal protein L13

Gene

rplM

Organism
Brucella abortus (strain 2308)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciBABO359391:GKDV-823-MONOMER.
    BMEL359391:GJOQ-823-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L13UniRule annotation
    Gene namesi
    Name:rplMUniRule annotation
    Ordered Locus Names:BAB1_0811
    OrganismiBrucella abortus (strain 2308)
    Taxonomic identifieri359391 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
    ProteomesiUP000002719: Chromosome I

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 15415450S ribosomal protein L13PRO_0000261696Add
    BLAST

    Proteomic databases

    PRIDEiQ2YND8.

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Protein-protein interaction databases

    STRINGi359391.BAB1_0811.

    Structurei

    3D structure databases

    ProteinModelPortaliQ2YND8.
    SMRiQ2YND8. Positions 1-143.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L13P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0102.
    HOGENOMiHOG000225286.
    KOiK02871.
    OMAiHQEFLKM.
    OrthoDBiEOG628FBD.

    Family and domain databases

    Gene3Di3.90.1180.10. 1 hit.
    HAMAPiMF_01366. Ribosomal_L13.
    InterProiIPR005822. Ribosomal_L13.
    IPR005823. Ribosomal_L13_bac-type.
    IPR023564. Ribosomal_L13_dom.
    [Graphical view]
    PANTHERiPTHR11545. PTHR11545. 1 hit.
    PfamiPF00572. Ribosomal_L13. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
    SUPFAMiSSF52161. SSF52161. 1 hit.
    TIGRFAMsiTIGR01066. rplM_bact. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q2YND8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATFSQKPAE VVKKWVLIDA EGLVVGRLAS LVANRLRGKH KATFTPHVDD    50
    GDNVIIINAD KVVLTGKKYT DKKYYWHTGH PGGIKERTAR QILEGRFPER 100
    VLEKAIERMI PRGPLGRRQM KNLRVNAGPN HQHEAQQPEV LDVAALNRKN 150
    KGNA 154
    Length:154
    Mass (Da):17,301
    Last modified:February 7, 2006 - v1
    Checksum:i94EA3F7051AAF413
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM040264 Genomic DNA. Translation: CAJ10767.1.
    RefSeqiYP_414244.1. NC_007618.1.

    Genome annotation databases

    EnsemblBacteriaiCAJ10767; CAJ10767; BAB1_0811.
    GeneIDi3787505.
    KEGGibmf:BAB1_0811.
    PATRICi17844531. VBIBruMel86222_0846.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM040264 Genomic DNA. Translation: CAJ10767.1 .
    RefSeqi YP_414244.1. NC_007618.1.

    3D structure databases

    ProteinModelPortali Q2YND8.
    SMRi Q2YND8. Positions 1-143.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 359391.BAB1_0811.

    Proteomic databases

    PRIDEi Q2YND8.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAJ10767 ; CAJ10767 ; BAB1_0811 .
    GeneIDi 3787505.
    KEGGi bmf:BAB1_0811.
    PATRICi 17844531. VBIBruMel86222_0846.

    Phylogenomic databases

    eggNOGi COG0102.
    HOGENOMi HOG000225286.
    KOi K02871.
    OMAi HQEFLKM.
    OrthoDBi EOG628FBD.

    Enzyme and pathway databases

    BioCyci BABO359391:GKDV-823-MONOMER.
    BMEL359391:GJOQ-823-MONOMER.

    Family and domain databases

    Gene3Di 3.90.1180.10. 1 hit.
    HAMAPi MF_01366. Ribosomal_L13.
    InterProi IPR005822. Ribosomal_L13.
    IPR005823. Ribosomal_L13_bac-type.
    IPR023564. Ribosomal_L13_dom.
    [Graphical view ]
    PANTHERi PTHR11545. PTHR11545. 1 hit.
    Pfami PF00572. Ribosomal_L13. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002181. Ribosomal_L13. 1 hit.
    SUPFAMi SSF52161. SSF52161. 1 hit.
    TIGRFAMsi TIGR01066. rplM_bact. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 2308.

    Entry informationi

    Entry nameiRL13_BRUA2
    AccessioniPrimary (citable) accession number: Q2YND8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 28, 2006
    Last sequence update: February 7, 2006
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Brucella abortus strain 2308
      Brucella abortus (strain 2308): entries and gene names
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3