Reviewed, UniProtKB/Swiss-Prot Q2YMY0 (SSRP_BRUA2)

Names and origin

Protein names

Recommended name:
    SsrA-binding protein

Gene names

Name:	smpB
Ordered Locus Names:	BAB1_0667

Organism

Brucella abortus (strain 2308) [Complete proteome] [HAMAP]

Taxonomic identifier

359391 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Brucellaceae › Brucella

Protein attributes

Sequence length	158 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes By similarity.
Subcellular location	Cytoplasm Potential.
Sequence similarities	Belongs to the smpB family.

Ontologies

Keywords
Cellular component	Cytoplasm
Ligand	RNA-binding
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	RNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 158	158	SsrA-binding protein HAMAP MF_00023		PRO_1000002007

Sequences

	Sequence		Length	Mass (Da)
	Q2YMY0-1 [UniParc]. Last modified February 7, 2006. Version 1. Checksum: F034DAD1DDD08D6E	FASTA	158	18,570
	10 20 30 40 50 60 MNKPKNSPAR KMIAENRKAR FNFEILDTLE AGLVLTGTEV KSLRANQANI AESYASFEDG 70 80 90 100 110 120 EFWLINSYIP EYTQGNRFNH EPRRLRKLLV SRREMSRLFN SVSREGMTVV PLKLYFNDRG 130 140 150 RAKLELALAR GKKTHDKRET EKKRDWNREK ARLLRDRG

References

[1]

"Whole-genome analyses of speciation events in pathogenic Brucellae." Chain P.S., Comerci D.J., Tolmasky M.E., Larimer F.W., Malfatti S.A., Vergez L.M., Aguero F., Land M.L., Ugalde R.A., Garcia E. Infect. Immun. 73:8353-8361(2005) [PubMed: 16299333] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	AM040264 Genomic DNA. Translation: CAJ10623.1.
RefSeq	YP_414109.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q2YMY0.
Genome annotation databases
GeneID	3788968.
GenomeReviews	Gene locus BAB1_0667 in contig AM040264_GR.
KEGG	bmf:BAB1_0667.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q2YMY0.
OMA	NVHISPH
Enzyme and pathway databases
BioCyc	BMEL359391:BAB1_0667-MON.
Family and domain databases
HAMAP	MF_00023. [Tree]
InterPro	IPR000037. SsrA-bd_prot. IPR020081. SsrA-bd_prot_CS. [Graphical view]
Gene3D	G3DSA:2.40.280.10. SmpB. 1 hit.
Pfam	PF01668. SmpB. 1 hit. [Graphical view]
ProDom	PD004488. SmpB. 1 hit. [Graphical view] [Entries sharing at least one domain]
TIGRFAMs	TIGR00086. smpB. 1 hit.
PROSITE	PS01317. SSRP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

SSRP_BRUA2

Accession

Primary (citable) accession number: Q2YMY0

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 15, 2008
Last sequence update:	February 7, 2006
Last modified:	November 24, 2009
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)