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Q2YM15

- RPOB_BRUA2

UniProt

Q2YM15 - RPOB_BRUA2

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Protein

DNA-directed RNA polymerase subunit beta

Gene

rpoB

Organism
Brucella abortus (strain 2308)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP
  3. ribonucleoside binding Source: InterPro

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciBABO359391:GKDV-1286-MONOMER.
BMEL359391:GJOQ-1286-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit betaUniRule annotation (EC:2.7.7.6UniRule annotation)
Short name:
RNAP subunit betaUniRule annotation
Alternative name(s):
RNA polymerase subunit betaUniRule annotation
Transcriptase subunit betaUniRule annotation
Gene namesi
Name:rpoBUniRule annotation
Ordered Locus Names:BAB1_1264
OrganismiBrucella abortus (strain 2308)
Taxonomic identifieri359391 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
ProteomesiUP000002719: Chromosome I

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 13771377DNA-directed RNA polymerase subunit betaPRO_0000224036Add
BLAST

Proteomic databases

PRIDEiQ2YM15.

Interactioni

Subunit structurei

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

Protein-protein interaction databases

STRINGi359391.BAB1_1264.

Structurei

3D structure databases

ProteinModelPortaliQ2YM15.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RNA polymerase beta chain family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0085.
HOGENOMiHOG000218612.
KOiK03043.
OMAiFPITDFS.
OrthoDBiEOG6M9DS6.

Family and domain databases

Gene3Di2.30.150.10. 1 hit.
2.40.270.10. 2 hits.
2.40.50.150. 2 hits.
3.90.1110.10. 2 hits.
HAMAPiMF_01321. RNApol_bact_RpoB.
InterProiIPR010243. DNA-dir_RNA_pol_bsu.
IPR019462. DNA-dir_RNA_pol_bsu_external_1.
IPR015712. DNA-dir_RNA_pol_su2.
IPR007120. DNA-dir_RNA_pol_su2_6.
IPR007121. RNA_pol_bsu_CS.
IPR007644. RNA_pol_bsu_protrusion.
IPR007642. RNA_pol_Rpb2_2.
IPR007645. RNA_pol_Rpb2_3.
IPR007641. RNA_pol_Rpb2_7.
IPR014724. RNA_pol_RPB2_OB-fold.
[Graphical view]
PANTHERiPTHR20856. PTHR20856. 1 hit.
PfamiPF04563. RNA_pol_Rpb2_1. 1 hit.
PF04561. RNA_pol_Rpb2_2. 2 hits.
PF04565. RNA_pol_Rpb2_3. 1 hit.
PF10385. RNA_pol_Rpb2_45. 1 hit.
PF00562. RNA_pol_Rpb2_6. 1 hit.
PF04560. RNA_pol_Rpb2_7. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02013. rpoB. 1 hit.
PROSITEiPS01166. RNA_POL_BETA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2YM15-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAQTHSFNGR KRVRKFFGKI PEVAEMPNLI EVQKASYDQF LMVEEPSGGR
60 70 80 90 100
PDEGLQAVFK SVFPIQDFSG ASMLEFVRYE FDPPKFDVDE CRQRDLTYSA
110 120 130 140 150
PLKVTLRLIV FDIDEDTGAK SIKDIKEQDV YMGDMPLMTD NGTFIVNGTE
160 170 180 190 200
RVIVSQMHRS PGVFFDHDKG KTHSSGKLLF AARVIPYRGS WLDIEFDSKD
210 220 230 240 250
IVYARIDRRR KLPATTLLMA LGMDGEEILS TFYKTVTYTR DGDNWRIPYS
260 270 280 290 300
AERFKGMKII SDLVDADTGE VVLEAGKKLT ARAAKQLAEK GLKAIKATED
310 320 330 340 350
DLFGSYLAED VVNYATGEIY LEAGDEIDEK VLKTLIDTGE TEINVLDIDH
360 370 380 390 400
VNIGAYIRNT LAVDKNESRQ EALFDIYRVM RPGEPPTMDS AEAMFHSLFF
410 420 430 440 450
DSERYDLSAV GRVKMNMRLD LDAEDTVRVL RKEDILAVVK MLVELRDGRG
460 470 480 490 500
EIDDIDNLGN RRVRSVGELM ENQYRVGLLR MERAIKERMS SIEIDTVMPQ
510 520 530 540 550
DLINAKPAAA AVREFFGSSQ LSQFMDQTNP LSEITHKRRL SALGPGGLTR
560 570 580 590 600
ERAGFEVRDV HPTHYGRICP IETPEGPNIG LINSLATFAR VNKYGFIESP
610 620 630 640 650
YRKVVDGKVT NDVVYLSAME EAKHSVAQAN VELDEQGGFV DEFVICRHAG
660 670 680 690 700
EVMMAPRENV DLMDVSPKQL VSVAAALIPF LENDDANRAL MGSNMQRQAV
710 720 730 740 750
PLVRAEAPFV GTGMEPIVAR DSGAAIAARR GGIVDQVDAT RIVIRATEEL
760 770 780 790 800
DPSKSGVDIY RLQKFQRSNQ STCINQRPLV RVGDRIHKGD IIADGPSTDL
810 820 830 840 850
GDLALGRNVL VAFMPWNGYN YEDSILLSEK IVSDDVFTSI HIEEFEVAAR
860 870 880 890 900
DTKLGPEEIT RDIPNVSEEA LKNLDEAGIV YIGAEVHPGD ILVGKITPKG
910 920 930 940 950
ESPMTPEEKL LRAIFGEKAS DVRDTSMRMP PGTYGTVVEV RVFNRHGVEK
960 970 980 990 1000
DERAMAIERE EIERLAKDRD DEQAILDRNV YGRLADMIDG KVAAAGPKGF
1010 1020 1030 1040 1050
KKGTTITREL MTEYPRSQWW QFAVEDEKLQ GELEALRSQY DDSKKLLEAR
1060 1070 1080 1090 1100
FMDKVEKVQR GDEMPPGVMK MVKVFVAVKR KIQPGDKMAG RHGNKGVVSR
1110 1120 1130 1140 1150
ILPVEDMPFL EDGTHADIVL NPLGVPSRMN VGQILETHLG WACAGMGKKI
1160 1170 1180 1190 1200
GELLDVYRKT ANIEPLRQTL EHIYPDNDRN EPVRSYDDDA ILMLANQVKR
1210 1220 1230 1240 1250
GVSIATPVFD GAVEADINAM LTDAGLATSG QSTLYDGRTG EPFDRQVTMG
1260 1270 1280 1290 1300
YIYMLKLHHL VDDKIHARSI GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL
1310 1320 1330 1340 1350
EAYGAAYTLQ EMLTVKSDDV AGRTKVYEAI VRGDDTFEAG IPESFNVLVK
1360 1370
EMRSLGLNVE LDDTREAEQP ALPDAAE
Length:1,377
Mass (Da):153,669
Last modified:February 7, 2006 - v1
Checksum:iB7E291EE7B6FE496
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM040264 Genomic DNA. Translation: CAJ11220.1.
RefSeqiYP_414650.1. NC_007618.1.

Genome annotation databases

EnsemblBacteriaiCAJ11220; CAJ11220; BAB1_1264.
GeneIDi3787856.
KEGGibmf:BAB1_1264.
PATRICi17845489. VBIBruMel86222_1314.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM040264 Genomic DNA. Translation: CAJ11220.1 .
RefSeqi YP_414650.1. NC_007618.1.

3D structure databases

ProteinModelPortali Q2YM15.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 359391.BAB1_1264.

Proteomic databases

PRIDEi Q2YM15.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAJ11220 ; CAJ11220 ; BAB1_1264 .
GeneIDi 3787856.
KEGGi bmf:BAB1_1264.
PATRICi 17845489. VBIBruMel86222_1314.

Phylogenomic databases

eggNOGi COG0085.
HOGENOMi HOG000218612.
KOi K03043.
OMAi FPITDFS.
OrthoDBi EOG6M9DS6.

Enzyme and pathway databases

BioCyci BABO359391:GKDV-1286-MONOMER.
BMEL359391:GJOQ-1286-MONOMER.

Miscellaneous databases

PROi Q2YM15.

Family and domain databases

Gene3Di 2.30.150.10. 1 hit.
2.40.270.10. 2 hits.
2.40.50.150. 2 hits.
3.90.1110.10. 2 hits.
HAMAPi MF_01321. RNApol_bact_RpoB.
InterProi IPR010243. DNA-dir_RNA_pol_bsu.
IPR019462. DNA-dir_RNA_pol_bsu_external_1.
IPR015712. DNA-dir_RNA_pol_su2.
IPR007120. DNA-dir_RNA_pol_su2_6.
IPR007121. RNA_pol_bsu_CS.
IPR007644. RNA_pol_bsu_protrusion.
IPR007642. RNA_pol_Rpb2_2.
IPR007645. RNA_pol_Rpb2_3.
IPR007641. RNA_pol_Rpb2_7.
IPR014724. RNA_pol_RPB2_OB-fold.
[Graphical view ]
PANTHERi PTHR20856. PTHR20856. 1 hit.
Pfami PF04563. RNA_pol_Rpb2_1. 1 hit.
PF04561. RNA_pol_Rpb2_2. 2 hits.
PF04565. RNA_pol_Rpb2_3. 1 hit.
PF10385. RNA_pol_Rpb2_45. 1 hit.
PF00562. RNA_pol_Rpb2_6. 1 hit.
PF04560. RNA_pol_Rpb2_7. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02013. rpoB. 1 hit.
PROSITEi PS01166. RNA_POL_BETA. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 2308.

Entry informationi

Entry nameiRPOB_BRUA2
AccessioniPrimary (citable) accession number: Q2YM15
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 21, 2006
Last sequence update: February 7, 2006
Last modified: October 1, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Brucella abortus strain 2308
    Brucella abortus (strain 2308): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3