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Protein

50S ribosomal protein L21

Gene

rplU

Organism
Brucella abortus (strain 2308)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein binds to 23S rRNA in the presence of protein L20.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciBABO359391:GKDV-1902-MONOMER.
BMEL359391:GJOQ-1902-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L21UniRule annotation
Gene namesi
Name:rplUUniRule annotation
Ordered Locus Names:BAB1_1858
OrganismiBrucella abortus (strain 2308)
Taxonomic identifieri359391 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
ProteomesiUP000002719 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14214250S ribosomal protein L21PRO_0000269290Add
BLAST

Proteomic databases

PRIDEiQ2YLL7.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L20.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliQ2YLL7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L21P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0261.
HOGENOMiHOG000036265.
KOiK02888.
OMAiNRTVIAF.
OrthoDBiEOG6TJ84X.

Family and domain databases

HAMAPiMF_01363. Ribosomal_L21.
InterProiIPR028909. L21p-like.
IPR001787. Ribosomal_L21.
[Graphical view]
PfamiPF00829. Ribosomal_L21p. 1 hit.
[Graphical view]
SUPFAMiSSF141091. SSF141091. 1 hit.
TIGRFAMsiTIGR00061. L21. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2YLL7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFAVIKTGGK QYRVAANDLI KVEKVAGEAG DIVEFAEVLM VGSTIGAPTV
60 70 80 90 100
AGSLVTAEVV EQGRGRKVIA FKKRRRQNSK RTRGHRQELT TIRISEILTD
110 120 130 140
GAKPSKKAAE KKAPKADAAE GEAAKPKKAA PKKAATKAES AE
Length:142
Mass (Da):15,067
Last modified:February 7, 2006 - v1
Checksum:iB822FA54BF3EE484
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM040264 Genomic DNA. Translation: CAJ11814.1.
RefSeqiWP_002966978.1. NZ_KN046823.1.
YP_415202.1. NC_007618.1.

Genome annotation databases

EnsemblBacteriaiCAJ11814; CAJ11814; BAB1_1858.
GeneIDi3788924.
KEGGibmf:BAB1_1858.
PATRICi17846760. VBIBruMel86222_1929.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM040264 Genomic DNA. Translation: CAJ11814.1.
RefSeqiWP_002966978.1. NZ_KN046823.1.
YP_415202.1. NC_007618.1.

3D structure databases

ProteinModelPortaliQ2YLL7.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ2YLL7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ11814; CAJ11814; BAB1_1858.
GeneIDi3788924.
KEGGibmf:BAB1_1858.
PATRICi17846760. VBIBruMel86222_1929.

Phylogenomic databases

eggNOGiCOG0261.
HOGENOMiHOG000036265.
KOiK02888.
OMAiNRTVIAF.
OrthoDBiEOG6TJ84X.

Enzyme and pathway databases

BioCyciBABO359391:GKDV-1902-MONOMER.
BMEL359391:GJOQ-1902-MONOMER.

Family and domain databases

HAMAPiMF_01363. Ribosomal_L21.
InterProiIPR028909. L21p-like.
IPR001787. Ribosomal_L21.
[Graphical view]
PfamiPF00829. Ribosomal_L21p. 1 hit.
[Graphical view]
SUPFAMiSSF141091. SSF141091. 1 hit.
TIGRFAMsiTIGR00061. L21. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 2308.

Entry informationi

Entry nameiRL21_BRUA2
AccessioniPrimary (citable) accession number: Q2YLL7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: February 7, 2006
Last modified: June 24, 2015
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Brucella abortus strain 2308
    Brucella abortus (strain 2308): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.