Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q2YB47

- GLGB_NITMU

UniProt

Q2YB47 - GLGB_NITMU

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei418 – 4181NucleophileUniRule annotation
Active sitei471 – 4711Proton donorUniRule annotation

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciNMUL323848:GKEC-734-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:Nmul_A0717
OrganismiNitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)
Taxonomic identifieri323848 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaNitrosomonadalesNitrosomonadaceaeNitrosospira
ProteomesiUP000002718: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7467461,4-alpha-glucan branching enzyme GlgBPRO_0000260672Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi323848.Nmul_A0717.

Structurei

3D structure databases

ProteinModelPortaliQ2YB47.
SMRiQ2YB47. Positions 129-736.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiGELSHAW.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2YB47-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRAYPTIQRP SIKRDPRLHA LLAGRLHDPF SFLGPHVEHG HWVVRAFHPH
60 70 80 90 100
AASIWINTDD GFESMTRAHP AGVFEWWGLI PLPLPYQLRI EEASFEAPAH
110 120 130 140 150
VYDIYDAYAF PPQVSEHDLY LFNEGRLHQA YRMLGSHLVE MEGVAGVRFS
160 170 180 190 200
VWAPNAERVS VVGSFNRWDG RIHPMVSHGA SGVWELFIPG VPTDSFYKYE
210 220 230 240 250
IRNRDTGAIL LKTDPYARHY EVRPGTAARA PSASRMTWGD ARWMAQRAVW
260 270 280 290 300
DWLATPLNIY EVHAGSWKRH ANGSFYSYRE LADHLLPYVR EMGYTHIELL
310 320 330 340 350
PISEHPLDES WGYQTTGYFA ATSRYGTSDD LKFFINACHQ EGIGVILDWV
360 370 380 390 400
PAHFPQDAFA LARFDGSALY EHEDPRMGLH QDWGTHIFNY GRNEVKSFLL
410 420 430 440 450
SSAHYWLSEF HLDGLRVDAV ASMLYLDYSR LPGEWLPNRY GGRENLEAID
460 470 480 490 500
FLRELNIMVH QEFPGALTLA EESTAWPGVS RPTYVGGLGF SMKWNMGWMN
510 520 530 540 550
DTLVYMRNDP VYRRFHHEQL TFGQLYAYSE NFVLPFSHDE VVHGKGSLLG
560 570 580 590 600
KMPGDAWQQF ANLRLLFTYQ MTYPGKKLNF MGNEFAQGRE WNSSRELDWY
610 620 630 640 650
QLGDGWHEGV KMAARDLNQL YSAVAALHQR DFEPEGFSWV DCHDADNSVI
660 670 680 690 700
SYLRFARNGS FALVVLNFTP VPRYRYRIGV PTSGSYQEIF NSDSRYYGGS
710 720 730 740
DLGNMGSIRT TGQPSMERMD SIVITLPPLA GLIFVHTDLP AINTDG
Length:746
Mass (Da):85,379
Last modified:December 20, 2005 - v1
Checksum:i273B277BCFA45F89
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000103 Genomic DNA. Translation: ABB74024.1.
RefSeqiYP_411416.1. NC_007614.1.

Genome annotation databases

EnsemblBacteriaiABB74024; ABB74024; Nmul_A0717.
GeneIDi3786063.
KEGGinmu:Nmul_A0717.
PATRICi22724500. VBINitMul110821_0825.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000103 Genomic DNA. Translation: ABB74024.1 .
RefSeqi YP_411416.1. NC_007614.1.

3D structure databases

ProteinModelPortali Q2YB47.
SMRi Q2YB47. Positions 129-736.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 323848.Nmul_A0717.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABB74024 ; ABB74024 ; Nmul_A0717 .
GeneIDi 3786063.
KEGGi nmu:Nmul_A0717.
PATRICi 22724500. VBINitMul110821_0825.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi GELSHAW.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci NMUL323848:GKEC-734-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 1 of Nitrosospira multiformis ATCC 25196."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Richardson P.
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25196 / NCIMB 11849.

Entry informationi

Entry nameiGLGB_NITMU
AccessioniPrimary (citable) accession number: Q2YB47
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: December 20, 2005
Last modified: October 1, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3