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Q2Y9U1 (Q2Y9U1_NITMU) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Nmul_A1177 EMBL ABB74480.1
OrganismNitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) [Complete proteome] [HAMAP] EMBL ABB74480.1
Taxonomic identifier323848 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaNitrosomonadalesNitrosomonadaceaeNitrosospira

Protein attributes

Sequence length853 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABB74480.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q2Y9U1 [UniParc].

Last modified December 20, 2005. Version 1.
Checksum: 7D1F25562A37F1EE

FASTA85395,584
        10         20         30         40         50         60 
MTNDDSLKTY RAKRDFSVTP EPSGVASGKT AIKSTAKVLS FVVQKHWATR LHYDFRLELE 

        70         80         90        100        110        120 
GTMKSWAVPK GPSFDPNDKR MAVHVEDHPI SYNSFEGEIP SGQYGAGKVI IWDKGTWIPL 

       130        140        150        160        170        180 
EDPHKGYRDG KLKFELRGLK LKGHWALVRM RKEENKKQEP WLLIKEKDEY VRSSREYSVV 

       190        200        210        220        230        240 
DEMPDSVAEL DVPDVPQPSK ASATSGSSSP KSSSIFRKGT KTTLPDNARK AELPRTLTPE 

       250        260        270        280        290        300 
LATLVDEPPV DPEEWIYEIK FDGYRMLSRI EGGEVRLITR NGNDWSHKLP HLIKALGKLK 

       310        320        330        340        350        360 
LKSSWLDGEI AVLDENGIPD FQSLQNAFDS AHTESIIYYL FDVPFYEGYD LRDASLVERR 

       370        380        390        400        410        420 
ALLQKLFEAH APDEIRFSDV FDVSPAEILD SACRLGLEGV IGKRKTSVYV SRRSQDWIKL 

       430        440        450        460        470        480 
KCKNRQEFVI GGYTDPKGTR KGIGSLLLGY YDEDRKLRYA GNVGAGFSDK TLEDLRARLD 

       490        500        510        520        530        540 
RIALTDSPFV KANGLDKNAH WVEPRLIAEV SFGEWTRGGH IRHSVFHGLR SDKKADVIVR 

       550        560        570        580        590        600 
EKPVHPAAKS APASAIPKSL KVTNPDRVID PSTGFTKVDL IRYYALVAPL MLPHLARRPV 

       610        620        630        640        650        660 
SLVRAPEGVS GELFFQKHWE KENMPGIEQL DPSLDPDHPP LLEVSTAEGL LSAVQMNVIE 

       670        680        690        700        710        720 
FHTWNATKNV IGKPDRIAFD LDPGSGVEWA LIQESAQLVN VFLRELGLKS FLKTSGGKGL 

       730        740        750        760        770        780 
HIVVPIRRLR DWDTVKGFSQ AIVQHLAKTI PTRFTAKSGP RNRVGKIFID YLRNGFGATT 

       790        800        810        820        830        840 
VSAWSVRARP GLGVSVPLAW EELSSLKSST RWSASNIHER LDKGNDPWAD YAETNQSIVP 

       850 
AMKKLGFTPS SKA 

« Hide

References

[1]"Complete sequence of chromosome 1 of Nitrosospira multiformis ATCC 25196."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Richardson P.
Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 25196 / NCIMB 11849.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000103 Genomic DNA. Translation: ABB74480.1.
RefSeqYP_411872.1. NC_007614.1.

3D structure databases

ProteinModelPortalQ2Y9U1.
SMRQ2Y9U1. Positions 558-844.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING323848.Nmul_A1177.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABB74480; ABB74480; Nmul_A1177.
GeneID3784346.
KEGGnmu:Nmul_A1177.
PATRIC22725608. VBINitMul110821_1372.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMANGLPDFQ.
OrthoDBEOG661H49.

Enzyme and pathway databases

BioCycNMUL323848:GKEC-1201-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ2Y9U1_NITMU
AccessionPrimary (citable) accession number: Q2Y9U1
Entry history
Integrated into UniProtKB/TrEMBL: December 20, 2005
Last sequence update: December 20, 2005
Last modified: May 14, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)