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Q2Y9U1

- Q2Y9U1_NITMU

UniProt

Q2Y9U1 - Q2Y9U1_NITMU

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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Nmul_A1177

Organism
Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNMUL323848:GKEC-1201-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
Gene namesi
Ordered Locus Names:Nmul_A1177Imported
OrganismiNitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)Imported
Taxonomic identifieri323848 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaNitrosomonadalesNitrosomonadaceaeNitrosospira
ProteomesiUP000002718: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi323848.Nmul_A1177.

Structurei

3D structure databases

ProteinModelPortaliQ2Y9U1.
SMRiQ2Y9U1. Positions 558-844.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2Y9U1-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MTNDDSLKTY RAKRDFSVTP EPSGVASGKT AIKSTAKVLS FVVQKHWATR
60 70 80 90 100
LHYDFRLELE GTMKSWAVPK GPSFDPNDKR MAVHVEDHPI SYNSFEGEIP
110 120 130 140 150
SGQYGAGKVI IWDKGTWIPL EDPHKGYRDG KLKFELRGLK LKGHWALVRM
160 170 180 190 200
RKEENKKQEP WLLIKEKDEY VRSSREYSVV DEMPDSVAEL DVPDVPQPSK
210 220 230 240 250
ASATSGSSSP KSSSIFRKGT KTTLPDNARK AELPRTLTPE LATLVDEPPV
260 270 280 290 300
DPEEWIYEIK FDGYRMLSRI EGGEVRLITR NGNDWSHKLP HLIKALGKLK
310 320 330 340 350
LKSSWLDGEI AVLDENGIPD FQSLQNAFDS AHTESIIYYL FDVPFYEGYD
360 370 380 390 400
LRDASLVERR ALLQKLFEAH APDEIRFSDV FDVSPAEILD SACRLGLEGV
410 420 430 440 450
IGKRKTSVYV SRRSQDWIKL KCKNRQEFVI GGYTDPKGTR KGIGSLLLGY
460 470 480 490 500
YDEDRKLRYA GNVGAGFSDK TLEDLRARLD RIALTDSPFV KANGLDKNAH
510 520 530 540 550
WVEPRLIAEV SFGEWTRGGH IRHSVFHGLR SDKKADVIVR EKPVHPAAKS
560 570 580 590 600
APASAIPKSL KVTNPDRVID PSTGFTKVDL IRYYALVAPL MLPHLARRPV
610 620 630 640 650
SLVRAPEGVS GELFFQKHWE KENMPGIEQL DPSLDPDHPP LLEVSTAEGL
660 670 680 690 700
LSAVQMNVIE FHTWNATKNV IGKPDRIAFD LDPGSGVEWA LIQESAQLVN
710 720 730 740 750
VFLRELGLKS FLKTSGGKGL HIVVPIRRLR DWDTVKGFSQ AIVQHLAKTI
760 770 780 790 800
PTRFTAKSGP RNRVGKIFID YLRNGFGATT VSAWSVRARP GLGVSVPLAW
810 820 830 840 850
EELSSLKSST RWSASNIHER LDKGNDPWAD YAETNQSIVP AMKKLGFTPS

SKA
Length:853
Mass (Da):95,584
Last modified:December 20, 2005 - v1
Checksum:i7D1F25562A37F1EE
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000103 Genomic DNA. Translation: ABB74480.1.
RefSeqiWP_011380521.1. NC_007614.1.
YP_411872.1. NC_007614.1.

Genome annotation databases

EnsemblBacteriaiABB74480; ABB74480; Nmul_A1177.
GeneIDi3784346.
KEGGinmu:Nmul_A1177.
PATRICi22725608. VBINitMul110821_1372.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000103 Genomic DNA. Translation: ABB74480.1 .
RefSeqi WP_011380521.1. NC_007614.1.
YP_411872.1. NC_007614.1.

3D structure databases

ProteinModelPortali Q2Y9U1.
SMRi Q2Y9U1. Positions 558-844.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 323848.Nmul_A1177.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABB74480 ; ABB74480 ; Nmul_A1177 .
GeneIDi 3784346.
KEGGi nmu:Nmul_A1177.
PATRICi 22725608. VBINitMul110821_1372.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci NMUL323848:GKEC-1201-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 1 of Nitrosospira multiformis ATCC 25196."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Richardson P.
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25196 / NCIMB 11849Imported.

Entry informationi

Entry nameiQ2Y9U1_NITMU
AccessioniPrimary (citable) accession number: Q2Y9U1
Entry historyi
Integrated into UniProtKB/TrEMBL: December 20, 2005
Last sequence update: December 20, 2005
Last modified: October 29, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3