Q2Y9U1 (Q2Y9U1_NITMU) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module EMBL ABB74480.1

Gene names

Ordered Locus Names:

Nmul_A1177 EMBL ABB74480.1

Organism

Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) [Complete proteome] [HAMAP] EMBL ABB74480.1

Taxonomic identifier

323848 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Nitrosomonadales › Nitrosomonadaceae › Nitrosospira › Nitrosospira multiformis

Protein attributes

Sequence length	853 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABB74480.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q2Y9U1 [UniParc]. Last modified December 20, 2005. Version 1. Checksum: 7D1F25562A37F1EE	FASTA	853	95,584
	10 20 30 40 50 60 MTNDDSLKTY RAKRDFSVTP EPSGVASGKT AIKSTAKVLS FVVQKHWATR LHYDFRLELE 70 80 90 100 110 120 GTMKSWAVPK GPSFDPNDKR MAVHVEDHPI SYNSFEGEIP SGQYGAGKVI IWDKGTWIPL 130 140 150 160 170 180 EDPHKGYRDG KLKFELRGLK LKGHWALVRM RKEENKKQEP WLLIKEKDEY VRSSREYSVV 190 200 210 220 230 240 DEMPDSVAEL DVPDVPQPSK ASATSGSSSP KSSSIFRKGT KTTLPDNARK AELPRTLTPE 250 260 270 280 290 300 LATLVDEPPV DPEEWIYEIK FDGYRMLSRI EGGEVRLITR NGNDWSHKLP HLIKALGKLK 310 320 330 340 350 360 LKSSWLDGEI AVLDENGIPD FQSLQNAFDS AHTESIIYYL FDVPFYEGYD LRDASLVERR 370 380 390 400 410 420 ALLQKLFEAH APDEIRFSDV FDVSPAEILD SACRLGLEGV IGKRKTSVYV SRRSQDWIKL 430 440 450 460 470 480 KCKNRQEFVI GGYTDPKGTR KGIGSLLLGY YDEDRKLRYA GNVGAGFSDK TLEDLRARLD 490 500 510 520 530 540 RIALTDSPFV KANGLDKNAH WVEPRLIAEV SFGEWTRGGH IRHSVFHGLR SDKKADVIVR 550 560 570 580 590 600 EKPVHPAAKS APASAIPKSL KVTNPDRVID PSTGFTKVDL IRYYALVAPL MLPHLARRPV 610 620 630 640 650 660 SLVRAPEGVS GELFFQKHWE KENMPGIEQL DPSLDPDHPP LLEVSTAEGL LSAVQMNVIE 670 680 690 700 710 720 FHTWNATKNV IGKPDRIAFD LDPGSGVEWA LIQESAQLVN VFLRELGLKS FLKTSGGKGL 730 740 750 760 770 780 HIVVPIRRLR DWDTVKGFSQ AIVQHLAKTI PTRFTAKSGP RNRVGKIFID YLRNGFGATT 790 800 810 820 830 840 VSAWSVRARP GLGVSVPLAW EELSSLKSST RWSASNIHER LDKGNDPWAD YAETNQSIVP 850 AMKKLGFTPS SKA

References

[1]

"Complete sequence of chromosome 1 of Nitrosospira multiformis ATCC 25196." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Richardson P. Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 25196 / NCIMB 11849.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000103 Genomic DNA. Translation: ABB74480.1.
RefSeq	YP_411872.1. NC_007614.1.
3D structure databases
ProteinModelPortal	Q2Y9U1.
SMR	Q2Y9U1. Positions 558-844.
ModBase	Search...
Protein-protein interaction databases
STRING	323848.Nmul_A1177.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABB74480; ABB74480; Nmul_A1177.
GeneID	3784346.
KEGG	nmu:Nmul_A1177.
PATRIC	22725608. VBINitMul110821_1372.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LVAECEF.
ProtClustDB	PRK05972.
Enzyme and pathway databases
BioCyc	NMUL323848:GKEC-1201-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q2Y9U1_NITMU

Accession

Primary (citable) accession number: Q2Y9U1

Entry history

Integrated into UniProtKB/TrEMBL:	December 20, 2005
Last sequence update:	December 20, 2005
Last modified:	May 29, 2013
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)