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Q2Y9U1

- Q2Y9U1_NITMU

UniProt

Q2Y9U1 - Q2Y9U1_NITMU

Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Nmul_A1177

Organism
Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 57 (01 Oct 2014)
      Sequence version 1 (20 Dec 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciNMUL323848:GKEC-1201-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
    Gene namesi
    Ordered Locus Names:Nmul_A1177Imported
    OrganismiNitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)Imported
    Taxonomic identifieri323848 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaNitrosomonadalesNitrosomonadaceaeNitrosospira
    ProteomesiUP000002718: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi323848.Nmul_A1177.

    Structurei

    3D structure databases

    ProteinModelPortaliQ2Y9U1.
    SMRiQ2Y9U1. Positions 558-844.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q2Y9U1-1 [UniParc]FASTAAdd to Basket

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    MTNDDSLKTY RAKRDFSVTP EPSGVASGKT AIKSTAKVLS FVVQKHWATR    50
    LHYDFRLELE GTMKSWAVPK GPSFDPNDKR MAVHVEDHPI SYNSFEGEIP 100
    SGQYGAGKVI IWDKGTWIPL EDPHKGYRDG KLKFELRGLK LKGHWALVRM 150
    RKEENKKQEP WLLIKEKDEY VRSSREYSVV DEMPDSVAEL DVPDVPQPSK 200
    ASATSGSSSP KSSSIFRKGT KTTLPDNARK AELPRTLTPE LATLVDEPPV 250
    DPEEWIYEIK FDGYRMLSRI EGGEVRLITR NGNDWSHKLP HLIKALGKLK 300
    LKSSWLDGEI AVLDENGIPD FQSLQNAFDS AHTESIIYYL FDVPFYEGYD 350
    LRDASLVERR ALLQKLFEAH APDEIRFSDV FDVSPAEILD SACRLGLEGV 400
    IGKRKTSVYV SRRSQDWIKL KCKNRQEFVI GGYTDPKGTR KGIGSLLLGY 450
    YDEDRKLRYA GNVGAGFSDK TLEDLRARLD RIALTDSPFV KANGLDKNAH 500
    WVEPRLIAEV SFGEWTRGGH IRHSVFHGLR SDKKADVIVR EKPVHPAAKS 550
    APASAIPKSL KVTNPDRVID PSTGFTKVDL IRYYALVAPL MLPHLARRPV 600
    SLVRAPEGVS GELFFQKHWE KENMPGIEQL DPSLDPDHPP LLEVSTAEGL 650
    LSAVQMNVIE FHTWNATKNV IGKPDRIAFD LDPGSGVEWA LIQESAQLVN 700
    VFLRELGLKS FLKTSGGKGL HIVVPIRRLR DWDTVKGFSQ AIVQHLAKTI 750
    PTRFTAKSGP RNRVGKIFID YLRNGFGATT VSAWSVRARP GLGVSVPLAW 800
    EELSSLKSST RWSASNIHER LDKGNDPWAD YAETNQSIVP AMKKLGFTPS 850
    SKA 853
    Length:853
    Mass (Da):95,584
    Last modified:December 20, 2005 - v1
    Checksum:i7D1F25562A37F1EE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000103 Genomic DNA. Translation: ABB74480.1.
    RefSeqiYP_411872.1. NC_007614.1.

    Genome annotation databases

    EnsemblBacteriaiABB74480; ABB74480; Nmul_A1177.
    GeneIDi3784346.
    KEGGinmu:Nmul_A1177.
    PATRICi22725608. VBINitMul110821_1372.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000103 Genomic DNA. Translation: ABB74480.1 .
    RefSeqi YP_411872.1. NC_007614.1.

    3D structure databases

    ProteinModelPortali Q2Y9U1.
    SMRi Q2Y9U1. Positions 558-844.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 323848.Nmul_A1177.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABB74480 ; ABB74480 ; Nmul_A1177 .
    GeneIDi 3784346.
    KEGGi nmu:Nmul_A1177.
    PATRICi 22725608. VBINitMul110821_1372.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci NMUL323848:GKEC-1201-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 1 of Nitrosospira multiformis ATCC 25196."
      Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Richardson P.
      Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 25196 / NCIMB 11849Imported.

    Entry informationi

    Entry nameiQ2Y9U1_NITMU
    AccessioniPrimary (citable) accession number: Q2Y9U1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 20, 2005
    Last sequence update: December 20, 2005
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3