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Protein
Submitted name:

Lactate dehydrogenase and related dehydrogenase

Gene

amb0195

Organism
Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciMMAG342108:GJNU-196-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Lactate dehydrogenase and related dehydrogenaseImported
Gene namesi
Ordered Locus Names:amb0195Imported
OrganismiMagnetospirillum magneticum (strain AMB-1 / ATCC 700264)Imported
Taxonomic identifieri342108 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeMagnetospirillum
Proteomesi
  • UP000007058 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi342108.amb0195.

Structurei

3D structure databases

ProteinModelPortaliQ2WAX6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini47 – 3533072-Hacid_dhInterPro annotationAdd
BLAST
Domaini143 – 3221802-Hacid_dh_CInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105C5I. Bacteria.
COG1052. LUCA.
HOGENOMiHOG000136700.
KOiK00015.
OMAiKSIGPDW.
OrthoDBiEOG6VXFC3.

Family and domain databases

Gene3Di3.40.50.720. 2 hits.
InterProiIPR006139. D-isomer_2_OHA_DH_cat_dom.
IPR029752. D-isomer_DH_CS1.
IPR006140. D-isomer_DH_NAD-bd.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PfamiPF00389. 2-Hacid_dh. 1 hit.
PF02826. 2-Hacid_dh_C. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
PROSITEiPS00065. D_2_HYDROXYACID_DH_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2WAX6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFKEPPTGL WTRGRRVARS IGKRSGRSQE MPSKKPVVVV SRKLPDVIET
60 70 80 90 100
RMMELFDTRL NVDDHPMTKT ELIEAVKIAD VLVPTVTDRI DAGILSQAGP
110 120 130 140 150
NLKLVANFGT GVDHIDLATA RQRGITVTNT PGVLTEDTAD MAMALIMSVP
160 170 180 190 200
RRIAEGERLI RSGDWKGWSP TFMLGHRIWG KRLGIIGMGR IGQAVARRAK
210 220 230 240 250
AFGMSIHYHN RKRVHPDIET ELEATYWESL DQMLARMDVV TVHCPHTPAT
260 270 280 290 300
FHLLSARRLE LLPKHAYVVN TARGEIVDEN ALTRMLIRGD LAGAGLDVFE
310 320 330 340 350
HEPAVNPKLL ALDNVVLLPH LGSATIEGRV DMGEKVLVNI KTFADGHQPP

DRVLASMF
Length:358
Mass (Da):39,749
Last modified:January 10, 2006 - v1
Checksum:i42FF2909D8E933B4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP007255 Genomic DNA. Translation: BAE48999.1.

Genome annotation databases

EnsemblBacteriaiBAE48999; BAE48999; amb0195.
KEGGimag:amb0195.
PATRICi22434654. VBIMagMag129836_0198.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP007255 Genomic DNA. Translation: BAE48999.1.

3D structure databases

ProteinModelPortaliQ2WAX6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi342108.amb0195.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAE48999; BAE48999; amb0195.
KEGGimag:amb0195.
PATRICi22434654. VBIMagMag129836_0198.

Phylogenomic databases

eggNOGiENOG4105C5I. Bacteria.
COG1052. LUCA.
HOGENOMiHOG000136700.
KOiK00015.
OMAiKSIGPDW.
OrthoDBiEOG6VXFC3.

Enzyme and pathway databases

BioCyciMMAG342108:GJNU-196-MONOMER.

Family and domain databases

Gene3Di3.40.50.720. 2 hits.
InterProiIPR006139. D-isomer_2_OHA_DH_cat_dom.
IPR029752. D-isomer_DH_CS1.
IPR006140. D-isomer_DH_NAD-bd.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PfamiPF00389. 2-Hacid_dh. 1 hit.
PF02826. 2-Hacid_dh_C. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
PROSITEiPS00065. D_2_HYDROXYACID_DH_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the facultative anaerobic magnetotactic bacterium Magnetospirillum sp. strain AMB-1."
    Matsunaga T., Okamura Y., Fukuda Y., Wahyudi A.T., Murase Y., Takeyama H.
    DNA Res. 12:157-166(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AMB-1 / ATCC 700264Imported.

Entry informationi

Entry nameiQ2WAX6_MAGSA
AccessioniPrimary (citable) accession number: Q2WAX6
Entry historyi
Integrated into UniProtKB/TrEMBL: January 10, 2006
Last sequence update: January 10, 2006
Last modified: March 16, 2016
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.