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Q2W5H6

- Q2W5H6_MAGSA

UniProt

Q2W5H6 - Q2W5H6_MAGSA

Protein

Alanine racemase

Gene

amb2095

Organism
Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 71 (01 Oct 2014)
      Sequence version 1 (10 Jan 2006)
      Previous versions | rss
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    Functioni

    Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.UniRule annotation

    Catalytic activityi

    L-alanine = D-alanine.UniRule annotation

    Cofactori

    Pyridoxal phosphate.UniRule annotationSAAS annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei77 – 771Proton acceptor; specific for D-alanineUniRule annotation
    Binding sitei175 – 1751SubstrateUniRule annotation
    Active sitei297 – 2971Proton acceptor; specific for L-alanineUniRule annotation
    Binding sitei345 – 3451Substrate; via amide nitrogenUniRule annotation

    GO - Molecular functioni

    1. alanine racemase activity Source: UniProtKB-HAMAP
    2. pyridoxal phosphate binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-alanine biosynthetic process Source: UniProtKB-UniPathway

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotation

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciMMAG342108:GJNU-2119-MONOMER.
    UniPathwayiUPA00042; UER00497.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
    Gene namesi
    Ordered Locus Names:amb2095Imported
    OrganismiMagnetospirillum magneticum (strain AMB-1 / ATCC 700264)Imported
    Taxonomic identifieri342108 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeMagnetospirillum
    ProteomesiUP000007058: Chromosome

    PTM / Processingi

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei77 – 771N6-(pyridoxal phosphate)lysineUniRule annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi342108.amb2095.

    Structurei

    3D structure databases

    ProteinModelPortaliQ2W5H6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the alanine racemase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0787.
    HOGENOMiHOG000031445.
    KOiK01775.
    OMAiRIGISIY.
    OrthoDBiEOG6PP9NJ.

    Family and domain databases

    Gene3Di2.40.37.10. 1 hit.
    3.20.20.10. 1 hit.
    HAMAPiMF_01201. Ala_racemase.
    InterProiIPR000821. Ala_racemase.
    IPR009006. Ala_racemase/Decarboxylase_C.
    IPR011079. Ala_racemase_C.
    IPR001608. Ala_racemase_N.
    IPR029066. PLP-binding_barrel.
    [Graphical view]
    PfamiPF00842. Ala_racemase_C. 1 hit.
    PF01168. Ala_racemase_N. 1 hit.
    [Graphical view]
    PRINTSiPR00992. ALARACEMASE.
    SMARTiSM01005. Ala_racemase_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    TIGRFAMsiTIGR00492. alr. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q2W5H6-1 [UniParc]FASTAAdd to Basket

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    MPGWASGNCA ATCAFAEQGL VFPSEERDGA LSPLPGRTMT DLARATALLT    50
    IDVAAIVANW KRLSALVAPA EASAVVKADC YGLGMDRIAP ALFAAGCRSF 100
    FVACVNEGIA LRRLLPGAMI HVLSGPMGGD EAEFAAHGLI PVLNSLSQMT 150
    GWASFAKKGS GAPAVAIHID TGMSRLGLSE PELERLAAKP EILAAMRPIL 200
    VMSHLACADD SDSPMNARQL TTLRRLASHL PALPQSIAAS SGIFLGRGFH 250
    LGMVRPGAAL YGLNPMPGRP NPMSQVIKLE GKIVQVRDVD SPQTVGYGAT 300
    HRVEGKRRLA IVAVGYADGW FRSLSNRGHG MIGGVKVPVV GRVSMDLTTF 350
    DVTDVPVESA HPGGLIQLIG PGYGPDHLAA EADTIGYEVL TALGRRHLRR 400
    WIGTEGAAS 409
    Length:409
    Mass (Da):42,845
    Last modified:January 10, 2006 - v1
    Checksum:i6BBC9920F79A4B5C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP007255 Genomic DNA. Translation: BAE50899.1.
    RefSeqiWP_011384495.1. NC_007626.1.
    YP_421458.1. NC_007626.1.

    Genome annotation databases

    EnsemblBacteriaiBAE50899; BAE50899; amb2095.
    GeneIDi3805023.
    KEGGimag:amb2095.
    PATRICi22438422. VBIMagMag129836_2057.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP007255 Genomic DNA. Translation: BAE50899.1 .
    RefSeqi WP_011384495.1. NC_007626.1.
    YP_421458.1. NC_007626.1.

    3D structure databases

    ProteinModelPortali Q2W5H6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 342108.amb2095.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAE50899 ; BAE50899 ; amb2095 .
    GeneIDi 3805023.
    KEGGi mag:amb2095.
    PATRICi 22438422. VBIMagMag129836_2057.

    Phylogenomic databases

    eggNOGi COG0787.
    HOGENOMi HOG000031445.
    KOi K01775.
    OMAi RIGISIY.
    OrthoDBi EOG6PP9NJ.

    Enzyme and pathway databases

    UniPathwayi UPA00042 ; UER00497 .
    BioCyci MMAG342108:GJNU-2119-MONOMER.

    Family and domain databases

    Gene3Di 2.40.37.10. 1 hit.
    3.20.20.10. 1 hit.
    HAMAPi MF_01201. Ala_racemase.
    InterProi IPR000821. Ala_racemase.
    IPR009006. Ala_racemase/Decarboxylase_C.
    IPR011079. Ala_racemase_C.
    IPR001608. Ala_racemase_N.
    IPR029066. PLP-binding_barrel.
    [Graphical view ]
    Pfami PF00842. Ala_racemase_C. 1 hit.
    PF01168. Ala_racemase_N. 1 hit.
    [Graphical view ]
    PRINTSi PR00992. ALARACEMASE.
    SMARTi SM01005. Ala_racemase_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    TIGRFAMsi TIGR00492. alr. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the facultative anaerobic magnetotactic bacterium Magnetospirillum sp. strain AMB-1."
      Matsunaga T., Okamura Y., Fukuda Y., Wahyudi A.T., Murase Y., Takeyama H.
      DNA Res. 12:157-166(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: AMB-1 / ATCC 700264Imported.

    Entry informationi

    Entry nameiQ2W5H6_MAGSA
    AccessioniPrimary (citable) accession number: Q2W5H6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 10, 2006
    Last sequence update: January 10, 2006
    Last modified: October 1, 2014
    This is version 71 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3