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Q2W5H6

- Q2W5H6_MAGSA

UniProt

Q2W5H6 - Q2W5H6_MAGSA

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Protein
Alanine racemase
Gene
amb2095
Organism
Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity.UniRule annotation

Catalytic activityi

L-alanine = D-alanine.UniRule annotation

Cofactori

Pyridoxal phosphate By similarity.UniRule annotationSAAS annotations

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei77 – 771Proton acceptor; specific for D-alanine By similarityUniRule annotation
Binding sitei175 – 1751Substrate By similarityUniRule annotation
Active sitei297 – 2971Proton acceptor; specific for L-alanine By similarityUniRule annotation
Binding sitei345 – 3451Substrate; via amide nitrogen By similarityUniRule annotation

GO - Molecular functioni

  1. alanine racemase activity Source: UniProtKB-HAMAP
  2. pyridoxal phosphate binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-alanine biosynthetic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotations

Keywords - Ligandi

Pyridoxal phosphateUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciMMAG342108:GJNU-2119-MONOMER.
UniPathwayiUPA00042; UER00497.

Names & Taxonomyi

Protein namesi
Recommended name:
Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:amb2095Imported
OrganismiMagnetospirillum magneticum (strain AMB-1 / ATCC 700264)
Taxonomic identifieri342108 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeMagnetospirillum
ProteomesiUP000007058: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei77 – 771N6-(pyridoxal phosphate)lysine By similarityUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi342108.amb2095.

Structurei

3D structure databases

ProteinModelPortaliQ2W5H6.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0787.
HOGENOMiHOG000031445.
KOiK01775.
OMAiRIGISIY.
OrthoDBiEOG6PP9NJ.

Family and domain databases

Gene3Di2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPiMF_01201. Ala_racemase.
InterProiIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSiPR00992. ALARACEMASE.
SMARTiSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR00492. alr. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2W5H6-1 [UniParc]FASTAAdd to Basket

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MPGWASGNCA ATCAFAEQGL VFPSEERDGA LSPLPGRTMT DLARATALLT    50
IDVAAIVANW KRLSALVAPA EASAVVKADC YGLGMDRIAP ALFAAGCRSF 100
FVACVNEGIA LRRLLPGAMI HVLSGPMGGD EAEFAAHGLI PVLNSLSQMT 150
GWASFAKKGS GAPAVAIHID TGMSRLGLSE PELERLAAKP EILAAMRPIL 200
VMSHLACADD SDSPMNARQL TTLRRLASHL PALPQSIAAS SGIFLGRGFH 250
LGMVRPGAAL YGLNPMPGRP NPMSQVIKLE GKIVQVRDVD SPQTVGYGAT 300
HRVEGKRRLA IVAVGYADGW FRSLSNRGHG MIGGVKVPVV GRVSMDLTTF 350
DVTDVPVESA HPGGLIQLIG PGYGPDHLAA EADTIGYEVL TALGRRHLRR 400
WIGTEGAAS 409
Length:409
Mass (Da):42,845
Last modified:January 10, 2006 - v1
Checksum:i6BBC9920F79A4B5C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP007255 Genomic DNA. Translation: BAE50899.1.
RefSeqiWP_011384495.1. NC_007626.1.
YP_421458.1. NC_007626.1.

Genome annotation databases

EnsemblBacteriaiBAE50899; BAE50899; amb2095.
GeneIDi3805023.
KEGGimag:amb2095.
PATRICi22438422. VBIMagMag129836_2057.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP007255 Genomic DNA. Translation: BAE50899.1 .
RefSeqi WP_011384495.1. NC_007626.1.
YP_421458.1. NC_007626.1.

3D structure databases

ProteinModelPortali Q2W5H6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 342108.amb2095.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAE50899 ; BAE50899 ; amb2095 .
GeneIDi 3805023.
KEGGi mag:amb2095.
PATRICi 22438422. VBIMagMag129836_2057.

Phylogenomic databases

eggNOGi COG0787.
HOGENOMi HOG000031445.
KOi K01775.
OMAi RIGISIY.
OrthoDBi EOG6PP9NJ.

Enzyme and pathway databases

UniPathwayi UPA00042 ; UER00497 .
BioCyci MMAG342108:GJNU-2119-MONOMER.

Family and domain databases

Gene3Di 2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPi MF_01201. Ala_racemase.
InterProi IPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR029066. PLP-binding_barrel.
[Graphical view ]
Pfami PF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view ]
PRINTSi PR00992. ALARACEMASE.
SMARTi SM01005. Ala_racemase_C. 1 hit.
[Graphical view ]
SUPFAMi SSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsi TIGR00492. alr. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the facultative anaerobic magnetotactic bacterium Magnetospirillum sp. strain AMB-1."
    Matsunaga T., Okamura Y., Fukuda Y., Wahyudi A.T., Murase Y., Takeyama H.
    DNA Res. 12:157-166(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AMB-1 / ATCC 700264.

Entry informationi

Entry nameiQ2W5H6_MAGSA
AccessioniPrimary (citable) accession number: Q2W5H6
Entry historyi
Integrated into UniProtKB/TrEMBL: January 10, 2006
Last sequence update: January 10, 2006
Last modified: September 3, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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