Reviewed, UniProtKB/Swiss-Prot Q2W3H2 (DADA_MAGSA)

Names and origin

Protein names

Recommended name:
    D-amino acid dehydrogenase small subunit
    EC=1.4.99.1

Gene names

Name:	dadA
Ordered Locus Names:	amb2799

Organism

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) [Complete proteome] [HAMAP]

Taxonomic identifier

342108 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodospirillales › Rhodospirillaceae › Magnetospirillum

Protein attributes

Sequence length	422 AA.
Sequence status	Complete.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Oxidative deamination of D-amino acids By similarity. HAMAP MF_01202
Catalytic activity	A D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor. HAMAP MF_01202
Cofactor	FAD By similarity. HAMAP MF_01202
Pathway	Amino-acid degradation; D-alanine degradation; NH(3) and pyruvate from D-alanine: step 1/1. HAMAP MF_01202
Subunit structure	Heterodimer of a small and a large subunit By similarity. HAMAP MF_01202
Sequence similarities	Belongs to the dadA oxidoreductase family.

Ontologies

Keywords
Ligand	FAD Flavoprotein
Molecular function	Oxidoreductase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	alanine catabolic process Inferred from electronic annotation. Source: HAMAP oxidation reduction Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	D-amino-acid dehydrogenase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 422	422	D-amino acid dehydrogenase small subunit HAMAP MF_01202		PRO_1000066098
Regions
	Nucleotide binding	3 – 17	15	FAD Potential

Sequences

	Sequence		Length	Mass (Da)
	Q2W3H2-1 [UniParc]. Last modified January 10, 2006. Version 1. Checksum: 839D83EBBDCC218F	FASTA	422	45,716
	10 20 30 40 50 60 MKVVVIGAGV VGTASAWYLA KAGHEVTVVD RREGAGLETS FANGGQISPC HAEPWANPSV 70 80 90 100 110 120 LPKVLKWLGR EDAPLLFRWN RWDPALWAWG LRFLANCSRS RAEINTERTL RVALYSRACL 130 140 150 160 170 180 GELRAETGIA YDQQVRGILH VYRDGAEFEH ACRAAEVMIR HGLRRLPRTP AECTAIEPAL 190 200 210 220 230 240 GAVQGELAGG IYTPDDESGD AHKFTRELAA LAAAKGVEFR WNVPIQSLLA DGDRVAGLAT 250 260 270 280 290 300 SDGTIRAESY VLAAGCDSPL LARPLGLRLP IIPAKGYSVT VPVDNHAGAP LVSITDDEHK 310 320 330 340 350 360 MVYSRLGDRL RAAGTAEMAG YDRMPNPVRN RLILDNARRL FPDGGDFDRA EPWAGLRPVT 370 380 390 400 410 420 PDSVPLLGAT PLRNLWLNTG HGTLGWTMSC GSGRIVADLV SGRPSAISMD GLGIDRFTSY LW

References

[1]

"Complete genome sequence of the facultative anaerobic magnetotactic bacterium Magnetospirillum sp. strain AMB-1." Matsunaga T., Okamura Y., Fukuda Y., Wahyudi A.T., Murase Y., Takeyama H. DNA Res. 12:157-166(2005) [PubMed: 16303747] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP007255 Genomic DNA. Translation: BAE51603.1.
RefSeq	YP_422162.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q2W3H2.
Genome annotation databases
GeneID	3804007.
GenomeReviews	Gene locus amb2799 in contig AP007255_GR.
KEGG	mag:amb2799.
NMPDR	fig|342108.5.peg.2484.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0665.
HOGENOM	HBG729204.
PhylomeDB	Q2W3H2.
Enzyme and pathway databases
BioCyc	MMAG342108:AMB2799-MONOMER.
Family and domain databases
HAMAP	MF_01202. DadA. [Tree]
InterPro	IPR006076. FAD-dep_OxRdtase. [Graphical view]
Pfam	PF01266. DAO. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

DADA_MAGSA

Accession

Primary (citable) accession number: Q2W3H2

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 5, 2008
Last sequence update:	January 10, 2006
Last modified:	January 19, 2010
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)