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Q2VCJ2 (Q2VCJ2_SOLTU) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Ribosomal protein L3-like EMBL ABB87120.1
Submitted name:
Uncharacterized protein EnsemblPlants PGSC0003DMT400076546
Gene names
Name:PGSC0003DMG400029760 EnsemblPlants PGSC0003DMT400076546
OrganismSolanum tuberosum (Potato) [Reference proteome] EMBL ABB87120.1
Taxonomic identifier4113 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › asterids › lamiids › Solanales › Solanaceae › Solanoideae › Solaneae › Solanum

Protein attributes

Sequence length389 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L3P family. RuleBase RU003905

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein RuleBase RU003905 EMBL ABB87120.1
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q2VCJ2 [UniParc].

Last modified January 10, 2006. Version 1.
Checksum: 54B9AEACB2F4DE21

FASTA38944,364
        10         20         30         40         50         60 
MSHRKFEHPR HGSLGFLPRK RAARHRGKVK AFPKDDPSKP CKLTAFLGYK AGMTHIVREV 

        70         80         90        100        110        120 
EKPGSKLHKK ETCEAVTIVE TPPMVIVGVV GYVKTPRGLR CLNTVWAQHL SEDIKRRFYK 

       130        140        150        160        170        180 
NWCKSKKKAF LKYSKKYETD EGKKDIQAQL EKLKKYACVI RVLAHTQIRK MKGLKQKKAH 

       190        200        210        220        230        240 
LMEIQVNGGS IAQKVDFAYG FFEKQVPVDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR 

       250        260        270        280        290        300 
LPRKTHRGLR KVACIGAWHP ARVSFTVARA GQNGYHHRTE MNKKVYKLGK VGQESHTAVT 

       310        320        330        340        350        360 
EFDRTEKEIT PIGGFAHYGV VKDDYLLIKG CCVGPKKRVV TLRQSLLNQT SRVALEEIKL 

       370        380 
KFIDTSSKFG HGRFQTTQEK QKFYGRLKA

« Hide

References

« Hide 'large scale' references
[1]"Full length sequencing of Solanum tuberosum cv. Kuras genes."
Nielsen H.V., Nielsen K.L., Emmersen J.M.G.
Submitted (OCT-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Genome sequence and analysis of the tuber crop potato."
Potato Genome Sequencing Consortium
Xu X., Pan S., Cheng S., Zhang B., Mu D., Ni P., Zhang G., Yang S., Li R., Wang J., Orjeda G., Guzman F., Torres M., Lozano R., Ponce O., Martinez D., De la Cruz G., Chakrabarti S.K. expand/collapse author list , Patil V.U., Skryabin K.G., Kuznetsov B.B., Ravin N.V., Kolganova T.V., Beletsky A.V., Mardanov A.V., Di Genova A., Bolser D.M., Martin D.M., Li G., Yang Y., Kuang H., Hu Q., Xiong X., Bishop G.J., Sagredo B., Mejia N., Zagorski W., Gromadka R., Gawor J., Szczesny P., Huang S., Zhang Z., Liang C., He J., Li Y., He Y., Xu J., Zhang Y., Xie B., Du Y., Qu D., Bonierbale M., Ghislain M., Herrera M.d.e.l. .R., Giuliano G., Pietrella M., Perrotta G., Facella P., O'Brien K., Feingold S.E., Barreiro L.E., Massa G.A., Diambra L., Whitty B.R., Vaillancourt B., Lin H., Massa A.N., Geoffroy M., Lundback S., DellaPenna D., Buell C.R., Sharma S.K., Marshall D.F., Waugh R., Bryan G.J., Destefanis M., Nagy I., Milbourne D., Thomson S.J., Fiers M., Jacobs J.M., Nielsen K.L., Sonderkaer M., Iovene M., Torres G.A., Jiang J., Veilleux R.E., Bachem C.W., de Boer J., Borm T., Kloosterman B., van Eck H., Datema E., Hekkert B.L., Goverse A., van Ham R.C., Visser R.G.
Nature 475:189-195(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DM1-3 516 R44 EnsemblPlants PGSC0003DMT400076546.
[3]EnsemblPlants
Submitted (FEB-2013) to UniProtKB
Cited for: IDENTIFICATION.
Strain: DM1-3 516 R44 EnsemblPlants PGSC0003DMT400076546.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		DQ241849 mRNA. Translation: ABB87120.1.

3D structure databases

ProteinModelPortalQ2VCJ2.
SMRQ2VCJ2. Positions 9-346.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPGSC0003DMT400076546; PGSC0003DMT400076546; PGSC0003DMG400029760.

Family and domain databases

InterProIPR000597. Ribosomal_L3.
IPR019926. Ribosomal_L3_CS.
IPR009000. Transl_elong_init/rib_B-barrel.
[Graphical view]
PfamPF00297. Ribosomal_L3. 1 hit.
[Graphical view]
SUPFAMSSF50447. Translat_factor. 1 hit.
PROSITEPS00474. RIBOSOMAL_L3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ2VCJ2_SOLTU
AccessionPrimary (citable) accession number: Q2VCJ2
Entry history
Integrated into UniProtKB/TrEMBL: January 10, 2006
Last sequence update: January 10, 2006
Last modified: April 3, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info