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Protein

Probable rhamnogalacturonate lyase C

Gene

rglC

Organism
Aspergillus oryzae (strain ATCC 42149 / RIB 40) (Yellow koji mold)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Pectinolytic enzymes consist of four classes of enzymes: pectin lyase, polygalacturonase, pectin methylesterase and rhamnogalacturonase. Degrades the rhamnogalacturonan I (RG-I) backbone of pectin (By similarity).By similarity

Catalytic activityi

Endotype eliminative cleavage of L-alpha-rhamnopyranosyl-(1->4)-alpha-D-galactopyranosyluronic acid bonds of rhamnogalacturonan I domains in ramified hairy regions of pectin leaving L-rhamnopyranose at the reducing end and 4-deoxy-4,5-unsaturated D-galactopyranosyluronic acid at the non-reducing end.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLyase
Biological processCarbohydrate metabolism, Cell wall biogenesis/degradation, Polysaccharide degradation

Protein family/group databases

CAZyiPL4 Polysaccharide Lyase Family 4

Names & Taxonomyi

Protein namesi
Recommended name:
Probable rhamnogalacturonate lyase C (EC:4.2.2.23)
Gene namesi
Name:rglC
ORF Names:AO090113000057
OrganismiAspergillus oryzae (strain ATCC 42149 / RIB 40) (Yellow koji mold)
Taxonomic identifieri510516 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaEurotiomycetesEurotiomycetidaeEurotialesAspergillaceaeAspergillus
Proteomesi
  • UP000006564 Componenti: Chromosome 5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_000039438022 – 695Probable rhamnogalacturonate lyase CAdd BLAST674

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi28N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi96N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi118N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi144N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi199N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi285N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi532N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi638N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Structurei

3D structure databases

ProteinModelPortaliQ2U5P7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the polysaccharide lyase 4 family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

HOGENOMiHOG000217023
OMAiFITQTRA
OrthoDBiEOG092C0TP2

Family and domain databases

CDDicd10316 RGL4_M, 1 hit
InterProiView protein in InterPro
IPR013784 Carb-bd-like_fold
IPR011013 Gal_mutarotase_sf_dom
IPR008979 Galactose-bd-like_sf
IPR029413 RG-lyase_II
IPR029411 RG-lyase_III
PfamiView protein in Pfam
PF14683 CBM-like, 1 hit
PF14686 fn3_3, 1 hit
SUPFAMiSSF49452 SSF49452, 1 hit
SSF49785 SSF49785, 1 hit
SSF74650 SSF74650, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q2U5P7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFLPSRKALA FLACLASHSV ALLTTSENST HFNLANDRFS IALAKSNGHI
60 70 80 90 100
VDVQLDGQDL LGPVDGNAGK GPYLDCSCIP SGFWTPGSGA HLELINGTDS
110 120 130 140 150
TGTAYGGLYM SATYAGTNQT LSQWFFLRGE ETGLHAFSRV TYFNETTPSL
160 170 180 190 200
RSLGELRTLF RPSTDLWTHF STSDGNYGPK PLGSNSGLVV QDATTYIGNV
210 220 230 240 250
TDDPYVSQYS DYFTKYTLAE SWRNHDVHGL FSDGSSSSDG STFGAWLVHN
260 270 280 290 300
TVETYYGGPL HSDLVVDGIV YNYLVSGHHG APTPNLTHGF DRTWGPQFYY
310 320 330 340 350
FNRGDSETTL ADLRADAAKY ADPEWNAEFY DSIADHIPNF TPSTGRTTFK
360 370 380 390 400
GKVSLPKGAK RPIIVLSEDG QDFQLNVFNT ESLQYWAEID KSGSFSIPRV
410 420 430 440 450
VEGTYRITIY ADEIFGWFIQ DHVKVLKSQS KDYSFTWKEE SAGKEIWRIG
460 470 480 490 500
IPDKSSGEYL HGYAPDTSKP LQPEQHRIYW GKYDYPADFP EGINFHVGKS
510 520 530 540 550
DPSQDLNYIH WAFFPSQGNH LRTEPYYDNV NNWTVTFDLT ADQLHNTNTA
560 570 580 590 600
TFTVQIAGAK TANGNAKWTP VEGKYSNLPW TVNVNGRYES TWVIPYWRSG
610 620 630 640 650
SCGVRSAVSC QNIEQKFAFP SKNLQEGKNE FVLSLPFNAS STETALLPDA
660 670 680 690
LYVQARVMGS RLDPARPAPN PLVNSNLGFG RDNPIMEFSN NRIIT
Length:695
Mass (Da):77,249
Last modified:January 24, 2006 - v1
Checksum:iE6032805EBE4EE1A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP007166 Genomic DNA Translation: BAE63118.1

Genome annotation databases

EnsemblFungiiBAE63118; BAE63118; AO090113000057

Similar proteinsi

Entry informationi

Entry nameiRGLC_ASPOR
AccessioniPrimary (citable) accession number: Q2U5P7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 18, 2010
Last sequence update: January 24, 2006
Last modified: February 28, 2018
This is version 60 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome