Q2TUN6 (Q2TUN6_GINBI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA-directed RNA polymerase RuleBase RU004279
EC=2.7.7.6 RuleBase RU004279

Gene names

Name:

rpb1 EMBL AAS79687.1

Organism

Ginkgo biloba (Ginkgo) (Maidenhair tree) EMBL AAS79687.1

Taxonomic identifier

3311 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Ginkgophyta › Ginkgoales › Ginkgoaceae › Ginkgo

Protein attributes

Sequence length	1013 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

General annotation (Comments)

Catalytic activity	Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). RuleBase RU004279
Sequence similarities	Belongs to the RNA polymerase beta' chain family. RuleBase RU004279

Ontologies

Keywords
Biological process	Transcription
Cellular component	DNA-directed RNA polymerase RuleBase RU004279
Molecular function	Nucleotidyltransferase RuleBase RU004279 Transferase
Gene Ontology (GO)
Molecular function	DNA binding Inferred from electronic annotation. Source: InterPro DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL AAS79687.1
	Non-terminal residue	1013	1	EMBL AAS79687.1

Sequences

	Sequence		Length	Mass (Da)
	Q2TUN6 [UniParc]. Last modified January 24, 2006. Version 1. Checksum: 6D13A887A68DC3C4	FASTA	1,013	115,335
	10 20 30 40 50 60 HLELAKPMYH IGFLKTVLSI LRCVCFNCSR ILADEEDHRF KQALKIRNPK HRLRKVLDCC 70 80 90 100 110 120 KNKTKCEGGD EIDDDQGQDG EEAAKKKRHG GCGAQQPKIS IDGMKMVAEY KLPRKKADEQ 130 140 150 160 170 180 EQLMPEPIER KQQLTAEKVL SVLKRISDEE CQLLGLNPKY ARPDWMILQV LPIPPPPVRP 190 200 210 220 230 240 SVMMDTTSRS EDDLTHQLAM IIRHNENLKR QERNGAPAHI ITEFAQLLQF HIATYFDNDL 250 260 270 280 290 300 PGQPRATQRS GRPIKSICNR LKAKEGRIRG NLMGKRVDFS ARTVITPDPN INIDQLGVPW 310 320 330 340 350 360 SIALNLTYPE TVTPYNIERL KELVEYGPHP PPGKTGAKYI IREDGQRLDL RYLKKSSDHH 370 380 390 400 410 420 LELGYKVERH LNDGDFVLFN RQPSLHKMSI MGHRIKIMPY STFRLNLSVT SPYNADFDGD 430 440 450 460 470 480 EMNMHVPQSF ETRAEVLELM MVPKCIVSPQ SNRPVMGIVQ DTLLGCRKVT KRDTFIEKDV 490 500 510 520 530 540 FMNILMWWED FDGKIPSPTI LKPRPLWTGK QVFNLIIPRQ INLIRYSAWH SESETGFITP 550 560 570 580 590 600 GDTCVRIEKG EVLSGTLCKK TLGTSSGSLI HVIWEEVGPD AARKFLGHTQ WLVNYWLLQQ 610 620 630 640 650 660 GFSIGIGDTI ADAATMETIN ETISKAKNEV KQLIKAAQEK ALEAEPGRTM MESFENRVNQ 670 680 690 700 710 720 VLNKARDDAG SSAQRSLSES NNLKAMVTAG SKGSFINISQ MTACVGQQNV EGKRIPYGFD 730 740 750 760 770 780 GRTLPHFTKD DNGPESRGFV ENSYLRGLTP QEFFFHAMGG REGLIDTAVK TSETGYIQRR 790 800 810 820 830 840 LVKAMEDIMV KYDGTVRNSL GDVIQFLYGE DGMDAVWIES QKLDSLKMKR KEFENVYKYE 850 860 870 880 890 900 IDNENWNPGY MLADHVEDLK TIREFRNVFD AEVQKLEADR RQLGTEIAPS GDNSWPMPVN 910 920 930 940 950 960 LKRLIWNAQK TFKIDLRKPS DMHPMEIVEA VDKLQERLKV VPGDDLMSIE AQKNATLFFN 970 980 990 1000 1010 ILLRSTFASK RVLKEYRLTR EAFEWVIGEI ESRFLQSLVA PGEMIGCVAA QSI

References

[1]	"Seed plant phylogeny: gnetophytes are derived conifers and a sister group to Pinaceae." Hajibabaei M., Xia J., Drouin G. Mol. Phylogenet. Evol. 40:208-217(2006) [PubMed: 16621615] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AY490553 mRNA. Translation: AAS79687.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Family and domain databases
InterPro	IPR000722. RNA_pol_asu. IPR006592. RNA_pol_N. IPR007080. RNA_pol_Rpb1_1. IPR007066. RNA_pol_Rpb1_3. IPR007083. RNA_pol_Rpb1_4. IPR007081. RNA_pol_Rpb1_5. IPR007075. RNA_pol_Rpb1_6. [Graphical view]
Pfam	PF04997. RNA_pol_Rpb1_1. 1 hit. PF00623. RNA_pol_Rpb1_2. 1 hit. PF04983. RNA_pol_Rpb1_3. 1 hit. PF05000. RNA_pol_Rpb1_4. 1 hit. PF04998. RNA_pol_Rpb1_5. 1 hit. PF04992. RNA_pol_Rpb1_6. 1 hit. [Graphical view]
SMART	SM00663. RPOLA_N. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q2TUN6_GINBI

Accession

Primary (citable) accession number: Q2TUN6

Entry history

Integrated into UniProtKB/TrEMBL:	January 24, 2006
Last sequence update:	January 24, 2006
Last modified:	April 5, 2011
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)