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Protein
Submitted name:

Sox5 protein

Gene

Sox5

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Sox5 proteinImported
Submitted name:
Transcription factor SOX-5Imported
Gene namesi
Name:Sox5Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 6

Organism-specific databases

MGIiMGI:98367. Sox5.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini508 – 57669HMG box DNA-bindingInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili217 – 27559Sequence analysisAdd
BLAST
Coiled coili405 – 43228Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

GeneTreeiENSGT00760000119274.
HOVERGENiHBG003915.
KOiK09269.
OrthoDBiEOG7W153F.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiIPR009071. HMG_box_dom.
[Graphical view]
PfamiPF00505. HMG_box. 1 hit.
[Graphical view]
SMARTiSM00398. HMG. 1 hit.
[Graphical view]
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiPS50118. HMG_BOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2TBA9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLTDPDLPQE FERMSSKRPA SPYGETDGEV AMVTSRQKVE EEESERLPAF
60 70 80 90 100
HLPLHVSFPN KPHSEEFQPV SLLTQETCGP RTPTVQHNTM EVDGNKVMSS
110 120 130 140 150
LAPYNSSTSP QKAEEGGRQS GESVSSAALG TPERRKGSLA DVVDTLKQRK
160 170 180 190 200
MEELIKNEPE DTPSIEKLLS KDWKDKLLAM GSGNFGEIKG TPESLAEKER
210 220 230 240 250
QLMGMINQLT SLREQLLAAH DEQKKLAASQ IEKQRQQMEL AKQQQEQIAR
260 270 280 290 300
QQQQLLQQQH KINLLQQQIQ QVQGQLPPLM IPVFPPDQRT LAAAAQQGFL
310 320 330 340 350
LPPGFSYKAG CSDPYPVQLI PTTMAAAAAA TPGLGPLQLQ DEVAQPLNLS
360 370 380 390 400
AKPKTSDGKS PASPTSPHMP ALRINSGAGP LKASVPAALA SPSARVSTIG
410 420 430 440 450
YLNDHDAVTK AIQEARQMKE QLRREQQALD GKVAVVNSIG LSNCRTEKEK
460 470 480 490 500
TTLESLTQQL AVKQNEEGKF SHGMMDFNMS GDSDGSAGVS ESRIYRESRG
510 520 530 540 550
RGSNEPHIKR PMNAFMVWAK DERRKILQAF PDMHNSNISK ILGSRWKAMT
560 570 580 590 600
NLEKQPYYEE QARLSKQHLE KYPDYKYKPR PKRTCLVDGK KLRIGEYKAI
610 620 630 640 650
MRNRRQEMRQ YFNVGQQAQI PIATAGVVYP SAIAMAGMPS PHLPSEHSSV
660 670 680 690 700
SSSPEPGMPV IQSTYGAKGE EPHIKEEIQA EDINGEIYEE YDEEEEDPDV
710
DYGSDSENHI AGQAN
Length:715
Mass (Da):79,257
Last modified:January 24, 2006 - v1
Checksum:iC605C0682D018EC1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC115900 Genomic DNA. No translation available.
AC116052 Genomic DNA. No translation available.
AC125145 Genomic DNA. No translation available.
AC127322 Genomic DNA. No translation available.
AC131695 Genomic DNA. No translation available.
AC132416 Genomic DNA. No translation available.
AC161059 Genomic DNA. No translation available.
AC165970 Genomic DNA. No translation available.
AC167021 Genomic DNA. No translation available.
BC110478 mRNA. Translation: AAI10479.1.
RefSeqiNP_001107031.2. NM_001113559.2.
NP_001230092.1. NM_001243163.1.
NP_035574.2. NM_011444.3.
UniGeneiMm.1752.

Genome annotation databases

EnsembliENSMUST00000077160; ENSMUSP00000076403; ENSMUSG00000041540.
GeneIDi20678.
KEGGimmu:20678.
UCSCiuc009eql.3. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC115900 Genomic DNA. No translation available.
AC116052 Genomic DNA. No translation available.
AC125145 Genomic DNA. No translation available.
AC127322 Genomic DNA. No translation available.
AC131695 Genomic DNA. No translation available.
AC132416 Genomic DNA. No translation available.
AC161059 Genomic DNA. No translation available.
AC165970 Genomic DNA. No translation available.
AC167021 Genomic DNA. No translation available.
BC110478 mRNA. Translation: AAI10479.1.
RefSeqiNP_001107031.2. NM_001113559.2.
NP_001230092.1. NM_001243163.1.
NP_035574.2. NM_011444.3.
UniGeneiMm.1752.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000077160; ENSMUSP00000076403; ENSMUSG00000041540.
GeneIDi20678.
KEGGimmu:20678.
UCSCiuc009eql.3. mouse.

Organism-specific databases

CTDi6660.
MGIiMGI:98367. Sox5.

Phylogenomic databases

GeneTreeiENSGT00760000119274.
HOVERGENiHBG003915.
KOiK09269.
OrthoDBiEOG7W153F.

Miscellaneous databases

NextBioi299173.
SOURCEiSearch...

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiIPR009071. HMG_box_dom.
[Graphical view]
PfamiPF00505. HMG_box. 1 hit.
[Graphical view]
SMARTiSM00398. HMG. 1 hit.
[Graphical view]
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiPS50118. HMG_BOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: PCR rescued clonesImported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  3. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  4. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ2TBA9_MOUSE
AccessioniPrimary (citable) accession number: Q2TBA9
Entry historyi
Integrated into UniProtKB/TrEMBL: January 24, 2006
Last sequence update: January 24, 2006
Last modified: May 11, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.