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Protein
Submitted name:

Sox5 protein

Gene

Sox5

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi508 – 576HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Sox5 proteinImported
Submitted name:
Transcription factor SOX-5Imported
Gene namesi
Name:Sox5Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 6

Organism-specific databases

MGIiMGI:98367. Sox5.

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Expressioni

Gene expression databases

BgeeiENSMUSG00000041540.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini508 – 576HMG box DNA-bindingInterPro annotationAdd BLAST69

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili217 – 275Sequence analysisAdd BLAST59
Coiled coili405 – 432Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

GeneTreeiENSGT00760000119274.
HOVERGENiHBG003915.
KOiK09269.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiView protein in InterPro
IPR009071. HMG_box_dom.
PfamiView protein in Pfam
PF00505. HMG_box. 1 hit.
SMARTiView protein in SMART
SM00398. HMG. 1 hit.
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiView protein in PROSITE
PS50118. HMG_BOX_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2TBA9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLTDPDLPQE FERMSSKRPA SPYGETDGEV AMVTSRQKVE EEESERLPAF
60 70 80 90 100
HLPLHVSFPN KPHSEEFQPV SLLTQETCGP RTPTVQHNTM EVDGNKVMSS
110 120 130 140 150
LAPYNSSTSP QKAEEGGRQS GESVSSAALG TPERRKGSLA DVVDTLKQRK
160 170 180 190 200
MEELIKNEPE DTPSIEKLLS KDWKDKLLAM GSGNFGEIKG TPESLAEKER
210 220 230 240 250
QLMGMINQLT SLREQLLAAH DEQKKLAASQ IEKQRQQMEL AKQQQEQIAR
260 270 280 290 300
QQQQLLQQQH KINLLQQQIQ QVQGQLPPLM IPVFPPDQRT LAAAAQQGFL
310 320 330 340 350
LPPGFSYKAG CSDPYPVQLI PTTMAAAAAA TPGLGPLQLQ DEVAQPLNLS
360 370 380 390 400
AKPKTSDGKS PASPTSPHMP ALRINSGAGP LKASVPAALA SPSARVSTIG
410 420 430 440 450
YLNDHDAVTK AIQEARQMKE QLRREQQALD GKVAVVNSIG LSNCRTEKEK
460 470 480 490 500
TTLESLTQQL AVKQNEEGKF SHGMMDFNMS GDSDGSAGVS ESRIYRESRG
510 520 530 540 550
RGSNEPHIKR PMNAFMVWAK DERRKILQAF PDMHNSNISK ILGSRWKAMT
560 570 580 590 600
NLEKQPYYEE QARLSKQHLE KYPDYKYKPR PKRTCLVDGK KLRIGEYKAI
610 620 630 640 650
MRNRRQEMRQ YFNVGQQAQI PIATAGVVYP SAIAMAGMPS PHLPSEHSSV
660 670 680 690 700
SSSPEPGMPV IQSTYGAKGE EPHIKEEIQA EDINGEIYEE YDEEEEDPDV
710
DYGSDSENHI AGQAN
Length:715
Mass (Da):79,257
Last modified:January 24, 2006 - v1
Checksum:iC605C0682D018EC1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC115900 Genomic DNA. No translation available.
AC116052 Genomic DNA. No translation available.
AC125145 Genomic DNA. No translation available.
AC127322 Genomic DNA. No translation available.
AC131695 Genomic DNA. No translation available.
AC132416 Genomic DNA. No translation available.
AC161059 Genomic DNA. No translation available.
AC165970 Genomic DNA. No translation available.
AC167021 Genomic DNA. No translation available.
BC110478 mRNA. Translation: AAI10479.1.
RefSeqiNP_001107031.2. NM_001113559.2.
NP_001230092.1. NM_001243163.1.
NP_035574.2. NM_011444.3.
UniGeneiMm.1752.

Genome annotation databases

EnsembliENSMUST00000077160; ENSMUSP00000076403; ENSMUSG00000041540.
GeneIDi20678.
KEGGimmu:20678.
UCSCiuc009eql.3. mouse.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiQ2TBA9_MOUSE
AccessioniPrimary (citable) accession number: Q2TBA9
Entry historyiIntegrated into UniProtKB/TrEMBL: January 24, 2006
Last sequence update: January 24, 2006
Last modified: July 5, 2017
This is version 96 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported