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Protein
Submitted name:

Sox5 protein

Gene

Sox5

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi508 – 576HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Sox5 proteinImported
Submitted name:
Transcription factor SOX-5Imported
Gene namesi
Name:Sox5Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 6

Organism-specific databases

MGIiMGI:98367 Sox5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Expressioni

Gene expression databases

BgeeiENSMUSG00000041540

Interactioni

Protein-protein interaction databases

IntActiQ2TBA9, 1 interactor

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini508 – 576HMG boxInterPro annotationAdd BLAST69

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili195 – 215Sequence analysisAdd BLAST21
Coiled coili217 – 275Sequence analysisAdd BLAST59
Coiled coili405 – 432Sequence analysisAdd BLAST28
Coiled coili446 – 466Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

GeneTreeiENSGT00760000119274
HOVERGENiHBG003915
KOiK09269

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q2TBA9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLTDPDLPQE FERMSSKRPA SPYGETDGEV AMVTSRQKVE EEESERLPAF
60 70 80 90 100
HLPLHVSFPN KPHSEEFQPV SLLTQETCGP RTPTVQHNTM EVDGNKVMSS
110 120 130 140 150
LAPYNSSTSP QKAEEGGRQS GESVSSAALG TPERRKGSLA DVVDTLKQRK
160 170 180 190 200
MEELIKNEPE DTPSIEKLLS KDWKDKLLAM GSGNFGEIKG TPESLAEKER
210 220 230 240 250
QLMGMINQLT SLREQLLAAH DEQKKLAASQ IEKQRQQMEL AKQQQEQIAR
260 270 280 290 300
QQQQLLQQQH KINLLQQQIQ QVQGQLPPLM IPVFPPDQRT LAAAAQQGFL
310 320 330 340 350
LPPGFSYKAG CSDPYPVQLI PTTMAAAAAA TPGLGPLQLQ DEVAQPLNLS
360 370 380 390 400
AKPKTSDGKS PASPTSPHMP ALRINSGAGP LKASVPAALA SPSARVSTIG
410 420 430 440 450
YLNDHDAVTK AIQEARQMKE QLRREQQALD GKVAVVNSIG LSNCRTEKEK
460 470 480 490 500
TTLESLTQQL AVKQNEEGKF SHGMMDFNMS GDSDGSAGVS ESRIYRESRG
510 520 530 540 550
RGSNEPHIKR PMNAFMVWAK DERRKILQAF PDMHNSNISK ILGSRWKAMT
560 570 580 590 600
NLEKQPYYEE QARLSKQHLE KYPDYKYKPR PKRTCLVDGK KLRIGEYKAI
610 620 630 640 650
MRNRRQEMRQ YFNVGQQAQI PIATAGVVYP SAIAMAGMPS PHLPSEHSSV
660 670 680 690 700
SSSPEPGMPV IQSTYGAKGE EPHIKEEIQA EDINGEIYEE YDEEEEDPDV
710
DYGSDSENHI AGQAN
Length:715
Mass (Da):79,257
Last modified:January 24, 2006 - v1
Checksum:iC605C0682D018EC1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC115900 Genomic DNA No translation available.
AC116052 Genomic DNA No translation available.
AC125145 Genomic DNA No translation available.
AC127322 Genomic DNA No translation available.
AC131695 Genomic DNA No translation available.
AC132416 Genomic DNA No translation available.
AC161059 Genomic DNA No translation available.
AC165970 Genomic DNA No translation available.
AC167021 Genomic DNA No translation available.
BC110478 mRNA Translation: AAI10479.1
RefSeqiNP_001107031.2, NM_001113559.2
NP_001230092.1, NM_001243163.1
NP_035574.2, NM_011444.3
UniGeneiMm.1752

Genome annotation databases

EnsembliENSMUST00000077160; ENSMUSP00000076403; ENSMUSG00000041540
GeneIDi20678
KEGGimmu:20678
UCSCiuc009eql.3 mouse

Similar proteinsi

Entry informationi

Entry nameiQ2TBA9_MOUSE
AccessioniPrimary (citable) accession number: Q2TBA9
Entry historyiIntegrated into UniProtKB/TrEMBL: January 24, 2006
Last sequence update: January 24, 2006
Last modified: May 23, 2018
This is version 105 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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