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Protein

Brorin

Gene

VWC2

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

BMP antagonist which may play a role in neural development. Promotes cell adhesion (By similarity).By similarity

GO - Biological processi

  • negative regulation of BMP signaling pathway Source: HGNC
  • positive regulation of cell-substrate adhesion Source: Ensembl
  • positive regulation of neuron differentiation Source: HGNC
Complete GO annotation...

Enzyme and pathway databases

BioCyciZFISH:G66-33261-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Brorin
Alternative name(s):
Brain-specific chordin-like protein
von Willebrand factor C domain-containing protein 2
Gene namesi
Name:VWC2
ORF Names:UNQ739/PRO1434
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 7

Organism-specific databases

HGNCiHGNC:30200. VWC2.

Subcellular locationi

GO - Cellular componenti

  • AMPA glutamate receptor complex Source: Ensembl
  • basement membrane Source: UniProtKB-SubCell
  • cell junction Source: UniProtKB-KW
  • extracellular space Source: HGNC
  • interstitial matrix Source: Ensembl
  • synapse Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Basement membrane, Cell junction, Extracellular matrix, Secreted, Synapse

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000188730.
PharmGKBiPA147357154.

Polymorphism and mutation databases

BioMutaiVWC2.
DMDMi121941771.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 27Sequence analysisAdd BLAST27
ChainiPRO_000030715928 – 325BrorinAdd BLAST298

Proteomic databases

PaxDbiQ2TAL6.
PeptideAtlasiQ2TAL6.
PRIDEiQ2TAL6.

Expressioni

Gene expression databases

BgeeiENSG00000188730.
CleanExiHS_VWC2.
GenevisibleiQ2TAL6. HS.

Organism-specific databases

HPAiHPA055243.

Interactioni

Subunit structurei

Peripherally associated with AMPAR complex. AMPAR complex consists of an inner core made of 4 pore-forming GluA/GRIA proteins (GRIA1, GRIA2, GRIA3 and GRIA4) and 4 major auxiliary subunits arranged in a twofold symmetry. One of the two pairs of distinct binding sites is occupied either by CNIH2, CNIH3 or CACNG2, CACNG3. The other harbors CACNG2, CACNG3, CACNG4, CACNG8 or GSG1L. This inner core of AMPAR complex is complemented by outer core constituents binding directly to the GluA/GRIA proteins at sites distinct from the interaction sites of the inner core constituents. Outer core constituents include at least PRRT1, PRRT2, CKAMP44/SHISA9, FRRS1L and NRN1. The proteins of the inner and outer core serve as a platform for other, more peripherally associated AMPAR constituents, including VWC2. Alone or in combination, these auxiliary subunits control the gating and pharmacology of the AMPAR complex and profoundly impact their biogenesis and protein processing (By similarity).By similarity

Protein-protein interaction databases

IntActiQ2TAL6. 10 interactors.
STRINGi9606.ENSP00000341819.

Structurei

3D structure databases

ProteinModelPortaliQ2TAL6.
SMRiQ2TAL6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini153 – 212VWFC 1PROSITE-ProRule annotationAdd BLAST60
Domaini216 – 274VWFC 2PROSITE-ProRule annotationAdd BLAST59

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi114 – 116Mediates cell adhesionBy similarity3

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi120 – 127Poly-Ala8

Sequence similaritiesi

Contains 2 VWFC domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiENOG410IK6F. Eukaryota.
ENOG410YDUI. LUCA.
GeneTreeiENSGT00720000108792.
HOGENOMiHOG000036086.
HOVERGENiHBG094842.
InParanoidiQ2TAL6.
OMAiSKQKQAW.
OrthoDBiEOG091G0Q3M.
PhylomeDBiQ2TAL6.
TreeFamiTF329913.

Family and domain databases

InterProiIPR001007. VWF_dom.
[Graphical view]
PfamiPF00093. VWC. 1 hit.
[Graphical view]
SMARTiSM00214. VWC. 2 hits.
[Graphical view]
PROSITEiPS01208. VWFC_1. 1 hit.
PS50184. VWFC_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q2TAL6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPSSTAMAVG ALSSSLLVTC CLMVALCSPS IPLEKLAQAP EQPGQEKREH
60 70 80 90 100
ASRDGPGRVN ELGRPARDEG GSGRDWKSKS GRGLAGREPW SKLKQAWVSQ
110 120 130 140 150
GGGAKAGDLQ VRPRGDTPQA EALAAAAQDA IGPELAPTPE PPEEYVYPDY
160 170 180 190 200
RGKGCVDESG FVYAIGEKFA PGPSACPCLC TEEGPLCAQP ECPRLHPRCI
210 220 230 240 250
HVDTSQCCPQ CKERKNYCEF RGKTYQTLEE FVVSPCERCR CEANGEVLCT
260 270 280 290 300
VSACPQTECV DPVYEPDQCC PICKNGPNCF AETAVIPAGR EVKTDECTIC
310 320
HCTYEEGTWR IERQAMCTRH ECRQM
Length:325
Mass (Da):35,282
Last modified:January 24, 2006 - v1
Checksum:iA38B673AB376B64D
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti52S → T in BAF51551 (PubMed:17400546).Curated1
Sequence conflicti52S → T in AAQ88759 (PubMed:12975309).Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_035371120A → G.Corresponds to variant rs769604dbSNPEnsembl.1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB292671 mRNA. Translation: BAF51551.1.
AY358393 mRNA. Translation: AAQ88759.1.
CH471128 Genomic DNA. Translation: EAW60985.1.
CH236955 Genomic DNA. Translation: EAL23904.1.
BC110857 mRNA. Translation: AAI10858.1.
CCDSiCCDS5508.1.
RefSeqiNP_940972.2. NM_198570.4.
UniGeneiHs.629302.
Hs.629814.
Hs.657556.

Genome annotation databases

EnsembliENST00000340652; ENSP00000341819; ENSG00000188730.
GeneIDi375567.
KEGGihsa:375567.
UCSCiuc003tot.2. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB292671 mRNA. Translation: BAF51551.1.
AY358393 mRNA. Translation: AAQ88759.1.
CH471128 Genomic DNA. Translation: EAW60985.1.
CH236955 Genomic DNA. Translation: EAL23904.1.
BC110857 mRNA. Translation: AAI10858.1.
CCDSiCCDS5508.1.
RefSeqiNP_940972.2. NM_198570.4.
UniGeneiHs.629302.
Hs.629814.
Hs.657556.

3D structure databases

ProteinModelPortaliQ2TAL6.
SMRiQ2TAL6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ2TAL6. 10 interactors.
STRINGi9606.ENSP00000341819.

Polymorphism and mutation databases

BioMutaiVWC2.
DMDMi121941771.

Proteomic databases

PaxDbiQ2TAL6.
PeptideAtlasiQ2TAL6.
PRIDEiQ2TAL6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000340652; ENSP00000341819; ENSG00000188730.
GeneIDi375567.
KEGGihsa:375567.
UCSCiuc003tot.2. human.

Organism-specific databases

CTDi375567.
GeneCardsiVWC2.
H-InvDBHIX0033600.
HGNCiHGNC:30200. VWC2.
HPAiHPA055243.
MIMi611108. gene.
neXtProtiNX_Q2TAL6.
OpenTargetsiENSG00000188730.
PharmGKBiPA147357154.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IK6F. Eukaryota.
ENOG410YDUI. LUCA.
GeneTreeiENSGT00720000108792.
HOGENOMiHOG000036086.
HOVERGENiHBG094842.
InParanoidiQ2TAL6.
OMAiSKQKQAW.
OrthoDBiEOG091G0Q3M.
PhylomeDBiQ2TAL6.
TreeFamiTF329913.

Enzyme and pathway databases

BioCyciZFISH:G66-33261-MONOMER.

Miscellaneous databases

GenomeRNAii375567.
PROiQ2TAL6.
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000188730.
CleanExiHS_VWC2.
GenevisibleiQ2TAL6. HS.

Family and domain databases

InterProiIPR001007. VWF_dom.
[Graphical view]
PfamiPF00093. VWC. 1 hit.
[Graphical view]
SMARTiSM00214. VWC. 2 hits.
[Graphical view]
PROSITEiPS01208. VWFC_1. 1 hit.
PS50184. VWFC_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiVWC2_HUMAN
AccessioniPrimary (citable) accession number: Q2TAL6
Secondary accession number(s): Q6UXE2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: January 24, 2006
Last modified: November 30, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 7
    Human chromosome 7: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.