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Q2T6R3

- GLGB_BURTA

UniProt

Q2T6R3 - GLGB_BURTA

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.By similarity

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei511 – 5111NucleophileBy similarity
Active sitei565 – 5651Proton donorBy similarity

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciBTHA271848:GJMY-4282-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgB (EC:2.4.1.18)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase
Alpha-(1->4)-glucan branching enzyme
Glycogen branching enzyme
Short name:
BE
Gene namesi
Name:glgB
Ordered Locus Names:BTH_II0939
OrganismiBurkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
Taxonomic identifieri271848 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiapseudomallei group
ProteomesiUP000001930: Chromosome II

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8348341,4-alpha-glucan branching enzyme GlgBPRO_0000260640Add
BLAST

Interactioni

Subunit structurei

Monomer.By similarity

Protein-protein interaction databases

STRINGi271848.BTH_II0939.

Structurei

3D structure databases

ProteinModelPortaliQ2T6R3.
SMRiQ2T6R3. Positions 221-832.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiAKLLFMG.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2T6R3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTGIGARTAW RNAVGRRPRN ARRVSRIAYR VSRVACRVSR IAYRVSRIAY
60 70 80 90 100
RVSRVAWRNV APAARRAHRP FPAVIHIASG IPLPTEPLPA PPVVVDRPAS
110 120 130 140 150
PDDAALIAPD DLARLLRGEH DDPFAVLGIH AESSARDVVV RCLLPGAARV
160 170 180 190 200
ELIDAASART LATLSPVGSG ELHAIRLPAP GPLRYRLRAH YADTVRDLDD
210 220 230 240 250
PYACTPWLGS LDCHLLARGE HRDAYRRLGA HPCVHDGLEG TAFALWAPNA
260 270 280 290 300
SCVSVVGSFN GWDARVHAMR KRIECGVWEL FVPGVGCGAL YKFALRTRDG
310 320 330 340 350
DRLLKADPYA RRTEAPPRTA SRICAPSAFG WRDDAWMRER AAAQSAHAPI
360 370 380 390 400
AIYEVHLDSW RRHPDGRAYS YDELADALIP YVAALGFTHV ELLPIAEYPF
410 420 430 440 450
AGSWGYQPVS LFAPSARWGE PDALRRFVER CHLAGLGVLL DWVPAHFPQD
460 470 480 490 500
AHGLARFDGT HLYEHEDRRV GLHRGWNTLV YNLGRHEVAN FLIANALYWL
510 520 530 540 550
REFHFDGLRV DAVASMLYLD YDRDDGQWLP NVHGGRENLE AVAFLRRLNE
560 570 580 590 600
TVHADAPQGA ITIAEESTAW PMVSAPVAAG GLGFDFKWNM GWMNDTLSFM
610 620 630 640 650
RVDPIHRRFH LDRLTFGLLY AWSEQFVLAL SHDEVVHAKG SLLAKMPGDA
660 670 680 690 700
WQRHANLRLY LAFQYAHPGK KLLFMGSEFG QEREWNHDRE LDWARLADPA
710 720 730 740 750
SAGVRRLVGD LNRLYRRRGC LHRRDADSRG FRWIDCADSH QTVIAWRRIG
760 770 780 790 800
DAPDDFVVVV CNFTPQPRTG YRIGVPAAGF YRELLNSDAA DYGGSGLGNL
810 820 830
GGVSSEPVPM HGEPHSLSLL LPPLAALVFA APGH
Length:834
Mass (Da):92,904
Last modified:January 24, 2006 - v1
Checksum:i59BCF5695BFA9C18
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000085 Genomic DNA. Translation: ABC35639.1.
RefSeqiWP_009896323.1. NZ_CM000439.1.
YP_439136.1. NC_007650.1.

Genome annotation databases

EnsemblBacteriaiABC35639; ABC35639; BTH_II0939.
GeneIDi3845029.
KEGGibte:BTH_II0939.
PATRICi19299451. VBIBurTha36512_1055.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000085 Genomic DNA. Translation: ABC35639.1 .
RefSeqi WP_009896323.1. NZ_CM000439.1.
YP_439136.1. NC_007650.1.

3D structure databases

ProteinModelPortali Q2T6R3.
SMRi Q2T6R3. Positions 221-832.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 271848.BTH_II0939.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABC35639 ; ABC35639 ; BTH_II0939 .
GeneIDi 3845029.
KEGGi bte:BTH_II0939.
PATRICi 19299451. VBIBurTha36512_1055.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi AKLLFMG.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci BTHA271848:GJMY-4282-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Bacterial genome adaptation to niches: divergence of the potential virulence genes in three Burkholderia species of different survival strategies."
    Kim H.S., Schell M.A., Yu Y., Ulrich R.L., Sarria S.H., Nierman W.C., DeShazer D.
    BMC Genomics 6:174-174(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: E264 / ATCC 700388 / DSM 13276 / CIP 106301.

Entry informationi

Entry nameiGLGB_BURTA
AccessioniPrimary (citable) accession number: Q2T6R3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: January 24, 2006
Last modified: October 29, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3