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Q2T6R3

- GLGB_BURTA

UniProt

Q2T6R3 - GLGB_BURTA

Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 72 (01 Oct 2014)
      Sequence version 1 (24 Jan 2006)
      Previous versions | rss
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    Functioni

    Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.By similarity

    Catalytic activityi

    Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei511 – 5111NucleophileBy similarity
    Active sitei565 – 5651Proton donorBy similarity

    GO - Molecular functioni

    1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
    2. cation binding Source: InterPro
    3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

    GO - Biological processi

    1. glycogen biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Keywords - Biological processi

    Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

    Enzyme and pathway databases

    BioCyciBTHA271848:GJMY-4282-MONOMER.
    UniPathwayiUPA00164.

    Protein family/group databases

    CAZyiCBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    1,4-alpha-glucan branching enzyme GlgB (EC:2.4.1.18)
    Alternative name(s):
    1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase
    Alpha-(1->4)-glucan branching enzyme
    Glycogen branching enzyme
    Short name:
    BE
    Gene namesi
    Name:glgB
    Ordered Locus Names:BTH_II0939
    OrganismiBurkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
    Taxonomic identifieri271848 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiapseudomallei group
    ProteomesiUP000001930: Chromosome II

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 8348341,4-alpha-glucan branching enzyme GlgBPRO_0000260640Add
    BLAST

    Interactioni

    Subunit structurei

    Monomer.By similarity

    Protein-protein interaction databases

    STRINGi271848.BTH_II0939.

    Structurei

    3D structure databases

    ProteinModelPortaliQ2T6R3.
    SMRiQ2T6R3. Positions 221-832.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG0296.
    HOGENOMiHOG000283037.
    KOiK00700.
    OMAiAKLLFMG.
    OrthoDBiEOG6JX7GT.

    Family and domain databases

    Gene3Di2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPiMF_00685. GlgB.
    InterProiIPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000463. GlgB. 1 hit.
    SUPFAMiSSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 1 hit.
    TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q2T6R3-1 [UniParc]FASTAAdd to Basket

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    MTGIGARTAW RNAVGRRPRN ARRVSRIAYR VSRVACRVSR IAYRVSRIAY    50
    RVSRVAWRNV APAARRAHRP FPAVIHIASG IPLPTEPLPA PPVVVDRPAS 100
    PDDAALIAPD DLARLLRGEH DDPFAVLGIH AESSARDVVV RCLLPGAARV 150
    ELIDAASART LATLSPVGSG ELHAIRLPAP GPLRYRLRAH YADTVRDLDD 200
    PYACTPWLGS LDCHLLARGE HRDAYRRLGA HPCVHDGLEG TAFALWAPNA 250
    SCVSVVGSFN GWDARVHAMR KRIECGVWEL FVPGVGCGAL YKFALRTRDG 300
    DRLLKADPYA RRTEAPPRTA SRICAPSAFG WRDDAWMRER AAAQSAHAPI 350
    AIYEVHLDSW RRHPDGRAYS YDELADALIP YVAALGFTHV ELLPIAEYPF 400
    AGSWGYQPVS LFAPSARWGE PDALRRFVER CHLAGLGVLL DWVPAHFPQD 450
    AHGLARFDGT HLYEHEDRRV GLHRGWNTLV YNLGRHEVAN FLIANALYWL 500
    REFHFDGLRV DAVASMLYLD YDRDDGQWLP NVHGGRENLE AVAFLRRLNE 550
    TVHADAPQGA ITIAEESTAW PMVSAPVAAG GLGFDFKWNM GWMNDTLSFM 600
    RVDPIHRRFH LDRLTFGLLY AWSEQFVLAL SHDEVVHAKG SLLAKMPGDA 650
    WQRHANLRLY LAFQYAHPGK KLLFMGSEFG QEREWNHDRE LDWARLADPA 700
    SAGVRRLVGD LNRLYRRRGC LHRRDADSRG FRWIDCADSH QTVIAWRRIG 750
    DAPDDFVVVV CNFTPQPRTG YRIGVPAAGF YRELLNSDAA DYGGSGLGNL 800
    GGVSSEPVPM HGEPHSLSLL LPPLAALVFA APGH 834
    Length:834
    Mass (Da):92,904
    Last modified:January 24, 2006 - v1
    Checksum:i59BCF5695BFA9C18
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000085 Genomic DNA. Translation: ABC35639.1.
    RefSeqiYP_439136.1. NC_007650.1.

    Genome annotation databases

    EnsemblBacteriaiABC35639; ABC35639; BTH_II0939.
    GeneIDi3845029.
    KEGGibte:BTH_II0939.
    PATRICi19299451. VBIBurTha36512_1055.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000085 Genomic DNA. Translation: ABC35639.1 .
    RefSeqi YP_439136.1. NC_007650.1.

    3D structure databases

    ProteinModelPortali Q2T6R3.
    SMRi Q2T6R3. Positions 221-832.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 271848.BTH_II0939.

    Protein family/group databases

    CAZyi CBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABC35639 ; ABC35639 ; BTH_II0939 .
    GeneIDi 3845029.
    KEGGi bte:BTH_II0939.
    PATRICi 19299451. VBIBurTha36512_1055.

    Phylogenomic databases

    eggNOGi COG0296.
    HOGENOMi HOG000283037.
    KOi K00700.
    OMAi AKLLFMG.
    OrthoDBi EOG6JX7GT.

    Enzyme and pathway databases

    UniPathwayi UPA00164 .
    BioCyci BTHA271848:GJMY-4282-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPi MF_00685. GlgB.
    InterProi IPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000463. GlgB. 1 hit.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 1 hit.
    TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Bacterial genome adaptation to niches: divergence of the potential virulence genes in three Burkholderia species of different survival strategies."
      Kim H.S., Schell M.A., Yu Y., Ulrich R.L., Sarria S.H., Nierman W.C., DeShazer D.
      BMC Genomics 6:174-174(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: E264 / ATCC 700388 / DSM 13276 / CIP 106301.

    Entry informationi

    Entry nameiGLGB_BURTA
    AccessioniPrimary (citable) accession number: Q2T6R3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 28, 2006
    Last sequence update: January 24, 2006
    Last modified: October 1, 2014
    This is version 72 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3