Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Ribose operon repressor, putative

Gene

BTH_I0812

Organism
Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciBTHA271848:GJMY-812-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Ribose operon repressor, putativeImported
Gene namesi
Ordered Locus Names:BTH_I0812Imported
ORF Names:DR63_2588Imported
OrganismiBurkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)Imported
Taxonomic identifieri271848 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiapseudomallei group
Proteomesi
  • UP000001930 Componenti: Chromosome I

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3EGCX-ray2.35A/B/C/D/E/F61-343[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini10 – 6455HTH lacI-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains HTH lacI-type DNA-binding domain.SAAS annotation

Phylogenomic databases

HOGENOMiHOG000220179.
OMAiNDKMAIG.
OrthoDBiEOG6SJJMM.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR010982. Lambda_DNA-bd_dom.
IPR001761. Peripla_BP/Lac1_sug-bd_dom.
IPR028082. Peripla_BP_I.
IPR000843. Tscrpt_reg_HTH_LacI.
[Graphical view]
PfamiPF00356. LacI. 1 hit.
PF00532. Peripla_BP_1. 1 hit.
[Graphical view]
SMARTiSM00354. HTH_LACI. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
SSF53822. SSF53822. 1 hit.
PROSITEiPS00356. HTH_LACI_1. 1 hit.
PS50932. HTH_LACI_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2T0D1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRKSHSHTV TLKDVAREAE VSYQTVSRAI NGYDEISAET REKVLDVCRR
60 70 80 90 100
LGYRPNRLAG SLRSKRSNVV GLIVSDIENV FFAEVASGVE SEARHKGYSV
110 120 130 140 150
LLANTAEDIV REREAVGQFF ERRVDGLILA PSEGEHDYLR TELPKTFPIV
160 170 180 190 200
AVNRELRIPG CGAVLSENVR GARTAVEYLI ARGHTRIGAI VGSAGLMTSR
210 220 230 240 250
ERLKGFRAAM SAAGLPVRQE WIAAGGVRAD NGRDGAIKVL TGADRPTALL
260 270 280 290 300
TSSHRITEGA MQALNVLGLR YGPDVEIVSF DNLPWMAFLD PPLPVVEQPT
310 320 330 340
RRIGQEAMRM LIHMIEGTGN ATEMRLQTRF VTHVGQDLSV EAE
Length:343
Mass (Da):37,597
Last modified:January 24, 2006 - v1
Checksum:i4BD7A36613CD24DE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000086 Genomic DNA. Translation: ABC37136.1.
CP008785 Genomic DNA. Translation: AIP25487.1.
RefSeqiWP_011401878.1. NZ_CM000438.1.

Genome annotation databases

EnsemblBacteriaiABC37136; ABC37136; BTH_I0812.
KEGGibte:BTH_I0812.
PATRICi19304428. VBIBurTha36512_3530.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000086 Genomic DNA. Translation: ABC37136.1.
CP008785 Genomic DNA. Translation: AIP25487.1.
RefSeqiWP_011401878.1. NZ_CM000438.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3EGCX-ray2.35A/B/C/D/E/F61-343[»]
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABC37136; ABC37136; BTH_I0812.
KEGGibte:BTH_I0812.
PATRICi19304428. VBIBurTha36512_3530.

Phylogenomic databases

HOGENOMiHOG000220179.
OMAiNDKMAIG.
OrthoDBiEOG6SJJMM.

Enzyme and pathway databases

BioCyciBTHA271848:GJMY-812-MONOMER.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR010982. Lambda_DNA-bd_dom.
IPR001761. Peripla_BP/Lac1_sug-bd_dom.
IPR028082. Peripla_BP_I.
IPR000843. Tscrpt_reg_HTH_LacI.
[Graphical view]
PfamiPF00356. LacI. 1 hit.
PF00532. Peripla_BP_1. 1 hit.
[Graphical view]
SMARTiSM00354. HTH_LACI. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
SSF53822. SSF53822. 1 hit.
PROSITEiPS00356. HTH_LACI_1. 1 hit.
PS50932. HTH_LACI_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Bacterial genome adaptation to niches: divergence of the potential virulence genes in three Burkholderia species of different survival strategies."
    Kim H.S., Schell M.A., Yu Y., Ulrich R.L., Sarria S.H., Nierman W.C., DeShazer D.
    BMC Genomics 6:174-174(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: E264Imported and E264 / ATCC 700388 / DSM 13276 / CIP 106301Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: E264.
  3. "Crystal structure of a putative ribose operon repressor from Burkholderia thailandensis."
    Bonanno J.B., Patskovsky Y., Gilmore M., Bain K.T., Hu S., Romero R., Wasserman S., Sauder J.M., Burley S.K., Almo S.C.
    Submitted (SEP-2008) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.35 ANGSTROMS) OF 61-343.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: E264Imported.

Entry informationi

Entry nameiQ2T0D1_BURTA
AccessioniPrimary (citable) accession number: Q2T0D1
Entry historyi
Integrated into UniProtKB/TrEMBL: January 24, 2006
Last sequence update: January 24, 2006
Last modified: May 11, 2016
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.