Q2SY74 (RNPH_BURTA) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 39.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Ribonuclease PH Short name=RNase PH EC=2.7.7.56 Alternative name(s): tRNA nucleotidyltransferase | ||||
| Gene names |
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| Organism | Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 271848 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › pseudomallei group |
Protein attributes
| Sequence length | 243 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology |
General annotation (Comments)
| Function | Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP MF_00564 |
| Catalytic activity | tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP MF_00564 |
| Sequence similarities | Belongs to the RNase PH family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | tRNA processing |
| Molecular function | Nucleotidyltransferase Transferase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | tRNA processing Inferred from electronic annotation. Source: UniProtKB-KW |
| Molecular function | tRNA binding Inferred from electronic annotation. Source: InterPro tRNA nucleotidyltransferase activityInferred from electronic annotation. Source: EC tRNA-specific ribonuclease activityInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||
Molecule processing | |||||||
|---|---|---|---|---|---|---|---|
| Chain | 1 – 243 | 243 | Ribonuclease PH HAMAP MF_00564 | PRO_1000024791 | |||
Sequences
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References
| [1] | "Bacterial genome adaptation to niches: divergence of the potential virulence genes in three Burkholderia species of different survival strategies." Kim H.S., Schell M.A., Yu Y., Ulrich R.L., Sarria S.H., Nierman W.C., DeShazer D. BMC Genomics 6:174-174(2005) [PubMed: 16336651] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: E264 / ATCC 700388 / DSM 13276 / CIP 106301. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | CP000086 Genomic DNA. Translation: ABC37325.1. |
| RefSeq | YP_442125.1. NC_007651.1. |
3D structure databases | |
| ProteinModelPortal | Q2SY74. |
| SMR | Q2SY74. Positions 7-241. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q2SY74. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| GeneID | 3848958. |
| GenomeReviews | Gene locus BTH_I1584 in contig CP000086_GR. |
| KEGG | bte:BTH_I1584. |
| PATRIC | 19306130. VBIBurTha36512_4370. |
| TIGR | BTH_I1584. |
Phylogenomic databases | |
| eggNOG | COG0689. |
| HOGENOM | HBG737187. |
| OMA | MLPRATG. |
| ProtClustDB | PRK00173. |
Enzyme and pathway databases | |
| BioCyc | BTHA271848:BTH_I1584-MONOMER. |
Family and domain databases | |
| HAMAP | MF_00564. RNase_PH. [Tree] |
| InterPro | IPR001247. ExoRNase_PH_dom1. IPR015847. ExoRNase_PH_dom2. IPR020568. Ribosomal_S5_D2-typ_fold. IPR002381. RNase_PH_bac-type. IPR018336. RNase_PH_CS. [Graphical view] |
| KO | K00989. |
| Pfam | PF01138. RNase_PH. 1 hit. PF03725. RNase_PH_C. 1 hit. [Graphical view] |
| SUPFAM | SSF55666. 3_ExoRNase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. |
| TIGRFAMs | TIGR01966. RNasePH. 1 hit. |
| PROSITE | PS01277. RIBONUCLEASE_PH. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | RNPH_BURTA | ||||||||
| Accession | Primary (citable) accession number: Q2SY74 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Prokaryotic Protein Annotation Program | ||||||||
Relevant documents
| SIMILARITY comments Index of protein domains and families |

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