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Q2SLV0 (TYPH_HAHCH) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putative thymidine phosphorylase

EC=2.4.2.4
Alternative name(s):
TdRPase
Gene names
Ordered Locus Names:HCH_01516
OrganismHahella chejuensis (strain KCTC 2396) [Complete proteome] [HAMAP]
Taxonomic identifier349521 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaOceanospirillalesHahellaceaeHahella

Protein attributes

Sequence length505 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate. HAMAP-Rule MF_00703

Sequence similarities

Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 505505Putative thymidine phosphorylase HAMAP-Rule MF_00703
PRO_0000314699

Sequences

Sequence LengthMass (Da)Tools
Q2SLV0 [UniParc].

Last modified January 24, 2006. Version 1.
Checksum: A7F6F18E58002A9E

FASTA50554,055
        10         20         30         40         50         60 
MQQRELNYLF LKRIGINTHQ EPVVYMRQDC HVCRSEGFNA HSRVRVTTNK RSIIATVHQV 

        70         80         90        100        110        120 
TDGWLSHQEA GLSDAAWRLL EAEDGEVAYF SHTKAVDSMS HVRGKLYGAS LTQESADEVV 

       130        140        150        160        170        180 
KDVAGGLYSD VQLAAFVTAC AGSRLNQDEV AALTSAMVKV GQRIDWGTSP IMDKHCVGGL 

       190        200        210        220        230        240 
PGNRTTPIVV AIVTACGLRM PKTSSRAITS PAGTADTMET MAPVNLTLAQ MKKVVEQEGG 

       250        260        270        280        290        300 
CIAWGGSVSL SPADDVLIRI ERALDLDSEG QLVASVISKK VAAGSTHVLI DIPIGMTAKV 

       310        320        330        340        350        360 
RSPEYAERLA SHMRYTGVKL GIQVEAMFTD GAQPVGRGIG PALEARDILA VLRNQAEAPA 

       370        380        390        400        410        420 
DLRVRALTLA GRLLEIGGVA SHGAGVARAR ETLESGAALH KFMAICEAQG GFREPALAPH 

       430        440        450        460        470        480 
CYEATADRVG VVSFVNNRFV AKLAKLAGAP SNSSAGVDFH VKLGQKVRVG EPLFSIYAEA 

       490        500 
PGELAYALDF LRDHPNEIRI EEESL 

« Hide

References

[1]"Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent."
Jeong H., Yim J.H., Lee C., Choi S.-H., Park Y.K., Yoon S.H., Hur C.-G., Kang H.-Y., Kim D., Lee H.H., Park K.H., Park S.-H., Park H.-S., Lee H.K., Oh T.K., Kim J.F.
Nucleic Acids Res. 33:7066-7073(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: KCTC 2396.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000155 Genomic DNA. Translation: ABC28374.1.
RefSeqYP_432799.1. NC_007645.1.

3D structure databases

ProteinModelPortalQ2SLV0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING349521.HCH_01516.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3838842.
KEGGhch:HCH_01516.
PATRIC22083994. VBIHahChe29232_1403.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0213.
HOGENOMHOG000252767.
KOK00758.
OMACHSEGFE.
OrthoDBEOG61ZTGG.
ProtClustDBPRK04350.

Enzyme and pathway databases

BioCycHCHE349521:GHAL-1454-MONOMER.

Family and domain databases

Gene3D3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPMF_00703. Thymid_phosp_2.
InterProIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view]
PANTHERPTHR10515. PTHR10515. 1 hit.
PfamPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view]
PIRSFPIRSF000478. TP_PyNP. 1 hit.
SMARTSM00941. PYNP_C. 1 hit.
[Graphical view]
SUPFAMSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsTIGR02645. ARCH_P_rylase. 1 hit.
PROSITEPS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTYPH_HAHCH
AccessionPrimary (citable) accession number: Q2SLV0
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: January 24, 2006
Last modified: February 19, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families