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Q2SKW0 (Q2SKW0_HAHCH) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
RNA polymerase sigma factor RuleBase RU000715
Gene names
Name:rpoS EMBL ABC28714.1
Ordered Locus Names:HCH_01877
OrganismHahella chejuensis (strain KCTC 2396) [Complete proteome] [HAMAP]
Taxonomic identifier349521 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Oceanospirillales › Hahellaceae › Hahella ›

Protein attributes

Sequence length332 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715

Sequence similarities

Belongs to the sigma-70 factor family. RuleBase RU000715

Sequences

Sequence LengthMass (Da)Tools
Q2SKW0 [UniParc].

Last modified January 24, 2006. Version 1.
Checksum: CBBC49CCC2DF286E

FASTA33238,057
        10         20         30         40         50         60 
MAAERESYAE DLAYDVDIDL AEIEAEEFED DESDVVVSID QGRTGRFSLG EGQSYRNLDA 

        70         80         90        100        110        120 
TQIYLNEIGF SPLLTPEEEV HFARMARRGD EKGRKRMIES NLRLVVKIAR RYVNRGLSLL 

       130        140        150        160        170        180 
DLIEEGNLGL IRAVEKFDPE RGFRFSTYAT WWIRQTIERA IMNQTRTIRL PIHVVKELNV 

       190        200        210        220        230        240 
YLRASRELTQ KLDHEPSAEE IADLLEKPVK DVKRMLGLNE RITSVDSPIG GNAEKSLLDT 

       250        260        270        280        290        300 
VADEASNDPA ELLQDSDLKG CLDRWLDQLS DKQQEVIARR FGLRGYPMST LEEVGQEIGL 

       310        320        330 
TRERVRQIQV EALKRMRELL EKEGLTGDTL FK

« Hide

References

[1]"Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent."
Jeong H., Yim J.H., Lee C., Choi S.-H., Park Y.K., Yoon S.H., Hur C.-G., Kang H.-Y., Kim D., Lee H.H., Park K.H., Park S.-H., Park H.-S., Lee H.K., Oh T.K., Kim J.F.
Nucleic Acids Res. 33:7066-7073(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: KCTC 2396 EMBL ABC28714.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000155 Genomic DNA. Translation: ABC28714.1.
RefSeqYP_433139.1. NC_007645.1.

3D structure databases

ProteinModelPortalQ2SKW0.
SMRQ2SKW0. Positions 73-164.
ModBaseSearch...

Protein-protein interaction databases

STRING349521.HCH_01877.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3838746.
KEGGhch:HCH_01877.
PATRIC22084680. VBIHahChe29232_1730.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0568.
HOGENOMHOG000270273.
KOK03087.
OMAKWLDELN.
ProtClustDBCLSK719431.

Enzyme and pathway databases

BioCycHCHE349521:GHAL-1874-MONOMER.

Family and domain databases

Gene3D1.10.10.10. 2 hits.
InterProIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR012761. RNA_pol_sigma_RpoS_proteobac.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSPR00046. SIGMA70FCT.
SUPFAMSSF88946. Sigma_r2. 1 hit.
SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMsTIGR02394. rpoS_proteo. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ2SKW0_HAHCH
AccessionPrimary (citable) accession number: Q2SKW0
Entry history
Integrated into UniProtKB/TrEMBL: January 24, 2006
Last sequence update: January 24, 2006
Last modified: May 1, 2013
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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