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Protein

Probable D-serine dehydratase

Gene

dsdA

Organism
Hahella chejuensis (strain KCTC 2396)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

D-serine = pyruvate + NH3.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciHCHE349521:GHAL-2859-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable D-serine dehydrataseUniRule annotation (EC:4.3.1.18UniRule annotation)
Alternative name(s):
D-serine deaminaseUniRule annotation
Short name:
DSDUniRule annotation
Gene namesi
Name:dsdAUniRule annotation
Ordered Locus Names:HCH_02978
OrganismiHahella chejuensis (strain KCTC 2396)
Taxonomic identifieri349521 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaOceanospirillalesHahellaceaeHahella
Proteomesi
  • UP000000238 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 437437Probable D-serine dehydratasePRO_0000291733Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei106 – 1061N6-(pyridoxal phosphate)lysineUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi349521.HCH_02978.

Family & Domainsi

Sequence similaritiesi

Belongs to the serine/threonine dehydratase family. DsdA subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105BZC. Bacteria.
COG3048. LUCA.
HOGENOMiHOG000218072.
KOiK01753.
OMAiESDPNCF.
OrthoDBiPOG091H0G2T.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat. 1 hit.
InterProiIPR011780. D_Ser_am_lyase.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 2 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2SHX7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNPLSIAQDE LKAIQSSQPI VWLNRNYQNP ASAPATPNVD ALYAAEARLK
60 70 80 90 100
RFAPLLQRLF PELEPSHGLI ESSLIQADRL NNRINPVGGL LFLKADHDLP
110 120 130 140 150
VAGSVKARGG IHEVLCFAES LALTHGVLKD VDSDYCTLAS QSARDLFSKH
160 170 180 190 200
TITVGSTGNL GLSIGVIGSA LGFKTVVHMS SDAKEWKMER LRKRGVRVVE
210 220 230 240 250
HDADYGAALE AGRLETIADP CGYFVDDERS PNLFMGYAVA AKRLQAQLEA
260 270 280 290 300
LNIKVDADHP LFVYLPAGVG GAPGGITYGL KHIFNDHVHC FFAEPVQSPC
310 320 330 340 350
MLLGMAGAPG AAPTSIYELD LKNRTDADGL AVGAASQWVC DATRNLLSGV
360 370 380 390 400
YTATDEQLYQ QLYLLKDLEN IEVEPSAAIG CLGPAMLTSE AGQKYLDSHR
410 420 430
LSHRMENSVH IPWLTGGSFV PDEEYQRYLA KAVNVST
Length:437
Mass (Da):47,323
Last modified:January 24, 2006 - v1
Checksum:iD13DF85ADB496BB0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000155 Genomic DNA. Translation: ABC29747.1.
RefSeqiWP_011396816.1. NC_007645.1.

Genome annotation databases

EnsemblBacteriaiABC29747; ABC29747; HCH_02978.
KEGGihch:HCH_02978.
PATRICi22086704. VBIHahChe29232_2725.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000155 Genomic DNA. Translation: ABC29747.1.
RefSeqiWP_011396816.1. NC_007645.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi349521.HCH_02978.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABC29747; ABC29747; HCH_02978.
KEGGihch:HCH_02978.
PATRICi22086704. VBIHahChe29232_2725.

Phylogenomic databases

eggNOGiENOG4105BZC. Bacteria.
COG3048. LUCA.
HOGENOMiHOG000218072.
KOiK01753.
OMAiESDPNCF.
OrthoDBiPOG091H0G2T.

Enzyme and pathway databases

BioCyciHCHE349521:GHAL-2859-MONOMER.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat. 1 hit.
InterProiIPR011780. D_Ser_am_lyase.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 2 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiSDHD_HAHCH
AccessioniPrimary (citable) accession number: Q2SHX7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 26, 2007
Last sequence update: January 24, 2006
Last modified: September 7, 2016
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.