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Protein

Alpha-amylase

Gene

HCH_04152

Organism
Hahella chejuensis (strain KCTC 2396)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro
  3. starch binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciHCHE349521:GHAL-3973-MONOMER.

Protein family/group databases

CAZyiCBM20. Carbohydrate-Binding Module Family 20.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:HCH_04152Imported
OrganismiHahella chejuensis (strain KCTC 2396)Imported
Taxonomic identifieri349521 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaOceanospirillalesHahellaceaeHahella
ProteomesiUP000000238: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi349521.HCH_04152.

Structurei

3D structure databases

ProteinModelPortaliQ2SER3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000253313.
KOiK01176.
OMAiISRNEYT.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF00686. CBM_20. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
SM01065. CBM_2. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF51445. SSF51445. 1 hit.
PROSITEiPS51166. CBM20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2SER3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVMDNVNNKN GDNRLGEGMK RFIFASVCAG ALCAAGNGYG EVNRHASVMV
60 70 80 90 100
HLFEWSWEDI AQECEQYLGP KGFTAVQVSP PQAHIGGAQW WTRYQPVSYV
110 120 130 140 150
LNSRSGDRER FQNMTQRCAA AGVDVYADLV INHMASTGFD FPDVPYGVND
160 170 180 190 200
FHNWNCGGIN YGDANQVWNC DLVGLKDLKT ESDYVRGKIA DYINDLMRLG
210 220 230 240 250
VKGFRIDAAK HMPPADIENI VGRVQGSPYI FQEVIRASGE AVQPEMYTHI
260 270 280 290 300
ADVTEFQMER DLAWHFRNGR MANLIDFSQW DGRVASSDAM VFVANHDDQR
310 320 330 340 350
QHPEWALTWN DPQGMYYLAH IFMLAYPYGY PRVMSSYYFN NHDQGPPNSG
360 370 380 390 400
PHTAGACGVD WVCEHRWGGI GNMAKFRQAT AANAYISNVS RDGDNRLAFG
410 420 430 440 450
RGGLGFVALN NDTGAWSASL DTGLPAGEYC DILHGDYVKG VCTGPTVFVD
460 470 480 490 500
SAGYASVNVA GRDAMAMHVE ARVADCPQCQ SQRVDVSFTC DNGQTQWGQS
510 520 530 540 550
VYAVGDLPEL GGWSPAGAVK LEPTAYPVWS GVISVPMGTQ IEWKCLKRDE
560 570
NNPGAGIEWQ PGSNTVFNSD LINATRGGW
Length:579
Mass (Da):63,784
Last modified:January 24, 2006 - v1
Checksum:i646B775E97207164
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000155 Genomic DNA. Translation: ABC30861.1.
RefSeqiYP_435286.1. NC_007645.1.

Genome annotation databases

EnsemblBacteriaiABC30861; ABC30861; HCH_04152.
GeneIDi3841602.
KEGGihch:HCH_04152.
PATRICi22088772. VBIHahChe29232_3759.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000155 Genomic DNA. Translation: ABC30861.1.
RefSeqiYP_435286.1. NC_007645.1.

3D structure databases

ProteinModelPortaliQ2SER3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi349521.HCH_04152.

Protein family/group databases

CAZyiCBM20. Carbohydrate-Binding Module Family 20.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABC30861; ABC30861; HCH_04152.
GeneIDi3841602.
KEGGihch:HCH_04152.
PATRICi22088772. VBIHahChe29232_3759.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000253313.
KOiK01176.
OMAiISRNEYT.
OrthoDBiEOG6RZB1B.

Enzyme and pathway databases

BioCyciHCHE349521:GHAL-3973-MONOMER.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF00686. CBM_20. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
SM01065. CBM_2. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF51445. SSF51445. 1 hit.
PROSITEiPS51166. CBM20. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KCTC 2396Imported.

Entry informationi

Entry nameiQ2SER3_HAHCH
AccessioniPrimary (citable) accession number: Q2SER3
Entry historyi
Integrated into UniProtKB/TrEMBL: January 24, 2006
Last sequence update: January 24, 2006
Last modified: January 7, 2015
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.