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Q2S4A0

- GLGB_SALRD

UniProt

Q2S4A0 - GLGB_SALRD

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Salinibacter ruber (strain DSM 13855 / M31)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei306 – 3061NucleophileUniRule annotation
Active sitei358 – 3581Proton donorUniRule annotation

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciSRUB309807:GJJD-844-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:SRU_0846
OrganismiSalinibacter ruber (strain DSM 13855 / M31)
Taxonomic identifieri309807 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeSalinibacter
ProteomesiUP000008674: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 6226221,4-alpha-glucan branching enzyme GlgBPRO_0000260696Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi309807.SRU_0846.

Structurei

3D structure databases

ProteinModelPortaliQ2S4A0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiECHQNNI.
OrthoDBiEOG6JX7GT.
PhylomeDBiQ2S4A0.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2S4A0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPHLTDDDIY YWRQGTHTHS YERMGAHPNQ RGTWFGVWAP NADRVEVTGD
60 70 80 90 100
FNDWRFGADV LDRREGGLWE GYVRGAQPGD KYKYHLRAGG EWFDRTDPYA
110 120 130 140 150
FRMEPPAQNT YEGLSALITD LDTYTWGDDA WMTTREGPSG IDGPLSIYEV
160 170 180 190 200
HLGSWRHEEH GASLSYREVA EPLADHVQNL GFTHVEFLPL AEHPYYGSWG
210 220 230 240 250
YQILGYYAPT FRYGDPEGLM HLIDTLHQRG IGVIMDWVPG HFATDPQGLT
260 270 280 290 300
YFDGSHLFEY EDPLMREHPD WGTRVFDFGK NGVRNFLLSN ALFWMDKYHV
310 320 330 340 350
DGLRVDAVAS MLYRDYSREG DWSPNVHGGR ENLGAISLLQ DTNEHVYDEY
360 370 380 390 400
PEAIMLAEES TAWPGVTTPT EHGGLGFLYK WNMGWMHDTL EYASKEPVHR
410 420 430 440 450
KHHHGDLTWT LSWAFSENYT LPLSHDEVVH GKNSLWSKMP GDDWQKAANL
460 470 480 490 500
RLLYAHMFGH PGKKLLFMGG EFGQHREWDH DRALEWDLAD EPLHEGLMEW
510 520 530 540 550
LGDLNHLYQN APALWNDQED GFEWIAYDDR ENSVLTYRRL NGDRSLVFVL
560 570 580 590 600
NFTPVVREDY RIGATGDGRW HERLNSDSDV YGGSNVGNRG AVHSDPVEKH
610 620
GHSHSLSLTL PPLGALVLEP AE
Length:622
Mass (Da):71,450
Last modified:January 24, 2006 - v1
Checksum:iD14B40C53CD8B114
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000159 Genomic DNA. Translation: ABC44792.1.
RefSeqiWP_011403610.1. NC_007677.1.
YP_444981.1. NC_007677.1.

Genome annotation databases

EnsemblBacteriaiABC44792; ABC44792; SRU_0846.
GeneIDi3850951.
KEGGisru:SRU_0846.
PATRICi23424049. VBISalRub86502_0872.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000159 Genomic DNA. Translation: ABC44792.1 .
RefSeqi WP_011403610.1. NC_007677.1.
YP_444981.1. NC_007677.1.

3D structure databases

ProteinModelPortali Q2S4A0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 309807.SRU_0846.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABC44792 ; ABC44792 ; SRU_0846 .
GeneIDi 3850951.
KEGGi sru:SRU_0846.
PATRICi 23424049. VBISalRub86502_0872.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi ECHQNNI.
OrthoDBi EOG6JX7GT.
PhylomeDBi Q2S4A0.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci SRUB309807:GJJD-844-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 13855 / M31.

Entry informationi

Entry nameiGLGB_SALRD
AccessioniPrimary (citable) accession number: Q2S4A0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: January 24, 2006
Last modified: October 29, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3