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Protein

C4-dicarboxylate transport protein

Gene

dctA

Organism
Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane.UniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Symport, Transport

Enzyme and pathway databases

BioCyciRRUB269796:GCN1-1460-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
C4-dicarboxylate transport proteinUniRule annotation
Gene namesi
Name:dctAUniRule annotation
Ordered Locus Names:Rru_A1437
OrganismiRhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1)
Taxonomic identifieri269796 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeRhodospirillum
Proteomesi
  • UP000001929 Componenti: Chromosome

Subcellular locationi

  • Cell inner membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei19 – 3921HelicalUniRule annotationAdd
BLAST
Transmembranei55 – 7521HelicalUniRule annotationAdd
BLAST
Transmembranei90 – 11021HelicalUniRule annotationAdd
BLAST
Transmembranei155 – 17521HelicalUniRule annotationAdd
BLAST
Transmembranei199 – 21921HelicalUniRule annotationAdd
BLAST
Transmembranei232 – 25221HelicalUniRule annotationAdd
BLAST
Transmembranei343 – 36321HelicalUniRule annotationAdd
BLAST
Transmembranei366 – 38621HelicalUniRule annotationAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 447447C4-dicarboxylate transport proteinPRO_0000322002Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi269796.Rru_A1437.

Structurei

3D structure databases

ProteinModelPortaliQ2RUF7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the sodium:dicarboxylate (SDF) symporter (TC 2.A.23) family. [View classification]UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105CK2. Bacteria.
COG1301. LUCA.
HOGENOMiHOG000208775.
KOiK11103.
OMAiIKMERLG.
OrthoDBiEOG69GZN1.

Family and domain databases

Gene3Di1.10.3860.10. 1 hit.
HAMAPiMF_01300. C4_dicarb_transport.
InterProiIPR023954. C4_dicarb_transport.
IPR001991. Na-dicarboxylate_symporter.
IPR018107. Na-dicarboxylate_symporter_CS.
[Graphical view]
PANTHERiPTHR11958. PTHR11958. 1 hit.
PfamiPF00375. SDF. 1 hit.
[Graphical view]
PRINTSiPR00173. EDTRNSPORT.
SUPFAMiSSF118215. SSF118215. 1 hit.
PROSITEiPS00713. NA_DICARBOXYL_SYMP_1. 1 hit.
PS00714. NA_DICARBOXYL_SYMP_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2RUF7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAFVVPAAPP RTPHKFYQIL YVQVLVAIVA GVLLGHFYPD LGSALKPLGD
60 70 80 90 100
AFIKLVKMII APVIFLTVVT GIAGLTDMQK VGRVAGKAMI YFLSFSTLAL
110 120 130 140 150
IIGMIVANVV HPGSGLNIDP ASLDAKAVQT YTSHAHDQSL VGFLMNIIPS
160 170 180 190 200
TPISAFASGD ILQVLFFAVL FGIALATVGE RGKPVLDLLN PLLQVVFRLV
210 220 230 240 250
AIVMKAAPLG AFGAMAFTIG KYGIGSIANL AMLVGTFYLT SGLFVFVVLG
260 270 280 290 300
LVARYNGFSL LALLRYIKEE LLLVLGTSSS EAALPTLMEK LERAGCKKSV
310 320 330 340 350
VGLVVPTGYS FNLDGTNIYM TLAALFIAQA TNIDLSLQDQ ILLLLVAMLS
360 370 380 390 400
SKGAAGITGA GFITLAATLS VVPSVPVAGM ALILGVDRFM SECRALTNFI
410 420 430 440
GNAVATIVVA KWEGELDRDR LALALKGGGK ALLPLEHEAA IHIPSKV
Length:447
Mass (Da):47,009
Last modified:January 24, 2006 - v1
Checksum:i9B75361FB7865FC8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000230 Genomic DNA. Translation: ABC22238.1.
RefSeqiWP_011389191.1. NC_007643.1.
YP_426525.1. NC_007643.1.

Genome annotation databases

EnsemblBacteriaiABC22238; ABC22238; Rru_A1437.
GeneIDi3834852.
KEGGirru:Rru_A1437.
PATRICi23326498. VBIRhoRub82919_1506.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000230 Genomic DNA. Translation: ABC22238.1.
RefSeqiWP_011389191.1. NC_007643.1.
YP_426525.1. NC_007643.1.

3D structure databases

ProteinModelPortaliQ2RUF7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi269796.Rru_A1437.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABC22238; ABC22238; Rru_A1437.
GeneIDi3834852.
KEGGirru:Rru_A1437.
PATRICi23326498. VBIRhoRub82919_1506.

Phylogenomic databases

eggNOGiENOG4105CK2. Bacteria.
COG1301. LUCA.
HOGENOMiHOG000208775.
KOiK11103.
OMAiIKMERLG.
OrthoDBiEOG69GZN1.

Enzyme and pathway databases

BioCyciRRUB269796:GCN1-1460-MONOMER.

Family and domain databases

Gene3Di1.10.3860.10. 1 hit.
HAMAPiMF_01300. C4_dicarb_transport.
InterProiIPR023954. C4_dicarb_transport.
IPR001991. Na-dicarboxylate_symporter.
IPR018107. Na-dicarboxylate_symporter_CS.
[Graphical view]
PANTHERiPTHR11958. PTHR11958. 1 hit.
PfamiPF00375. SDF. 1 hit.
[Graphical view]
PRINTSiPR00173. EDTRNSPORT.
SUPFAMiSSF118215. SSF118215. 1 hit.
PROSITEiPS00713. NA_DICARBOXYL_SYMP_1. 1 hit.
PS00714. NA_DICARBOXYL_SYMP_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of the chromosome of Rhodospirillum rubrum ATCC 11170."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M.
    , Kyrpides N., Mavrommatis K., Richardson P., Zhang Y., Roberts G., Reslewic S., Zhou S., Schwartz D.C.
    Submitted (DEC-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1.

Entry informationi

Entry nameiDCTA_RHORT
AccessioniPrimary (citable) accession number: Q2RUF7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: January 24, 2006
Last modified: May 11, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.