Q2RNG2 (GLND_RHORT) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
[Protein-PII] uridylyltransferase
Short name=PII uridylyl-transferase
EC=2.7.7.59

Alternative name(s):
UTase
Uridylyl-removing enzyme

Gene names

Name:	glnD
Ordered Locus Names:	Rru_A3539

Organism

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) [Reference proteome] [HAMAP]

Taxonomic identifier

269796 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodospirillales › Rhodospirillaceae › Rhodospirillum › Rhodospirillum rubrum

Protein attributes

Sequence length	936 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein By similarity. HAMAP-Rule MF_00277
Catalytic activity	UTP + [protein-PII] = diphosphate + uridylyl-[protein-PII]. HAMAP-Rule MF_00277
Sequence similarities	Belongs to the GlnD family.

Ontologies

Keywords
Biological process	Nitrogen fixation
Molecular function	Nucleotidyltransferase Transferase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	nitrogen fixation Inferred from electronic annotation. Source: HAMAP
Molecular_function	[protein-PII] uridylyltransferase activity Inferred from electronic annotation. Source: HAMAP amino acid binding Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: InterPro phosphoric diester hydrolase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 936	936	[Protein-PII] uridylyltransferase HAMAP-Rule MF_00277		PRO_0000231691

Sequences

	Sequence		Length	Mass (Da)
	Q2RNG2 [UniParc]. Last modified January 24, 2006. Version 1. Checksum: 6F952FC64FC6A76C	FASTA	936	105,094
	10 20 30 40 50 60 MTIPRIRQPR AVIDRKALTV VLEDLAATVT DNRERRARLL AVLKGALGDG RAEVRRRFLE 70 80 90 100 110 120 EKGTGAAVFA ENSHLMDQII RLLFDFTTTH VYPRANRTIG EQMTVLAVGG YGRGEMSPQS 130 140 150 160 170 180 DVDLLFLLPY KATPLHEQVV EYMLYTLWDM GLKVGHATRS IEECIRQARG DLTIRTAMLE 190 200 210 220 230 240 TRYLWGDRAL YGQLKTKFWT GVVTGTGPDF VEAKLAERDE RHLRMGDSRY VLEPNIKDGK 250 260 270 280 290 300 GGLRDLHTLL WIARYIYGVS DMRELVELGV LSADAATKFG RARAFLWTVR CHLHYLADRP 310 320 330 340 350 360 EERLTFDVQP AIAARMGYTD RNSGRGVERF MKHYFLMAKT VGDLTRIFCA VLEDQQKRRP 370 380 390 400 410 420 ILSIATLLMR KRNLGDFVLD GGRLAVAGRG AFREHPLQLI SLFKVAHDHG LDIHPDTLRL 430 440 450 460 470 480 VTEHLPTVTL LRNDAKANAL FMEILTSRKD PELALRQLSE SGVLARFIPD FGRVTAQMQF 490 500 510 520 530 540 DMYHVYTTDE HTIRAIGLLH RLETGALRDR MPAAADAVHK VQSRRALYLA VLLHDIAKGR 550 560 570 580 590 600 GGDHSILGAE VAMRLGPRLG MSEEETETVA WLVRHHLDMS RTAFKRDLDD IKTILDFTGL 610 620 630 640 650 660 VQSVERLHLL LALTTVDILA VGPAVWNNWK SSLLRELYTH SKDVLTSGFQ AEARDKRVAH 670 680 690 700 710 720 KREELAAALA DWPQASRERY LDLHYPAYWL TFDSATHLRH ARMLRRARDA GLTVAVEVLP 730 740 750 760 770 780 DPERAVSEVL VATDDHPGLF SKIAGAMALA GVNILDAKIT TMSDGGALDI FTVQTLEGHA 790 800 810 820 830 840 IEKEERIARL AKTVRDVLTG DLPLEKALRR QPPRLPERTR HLTVPPRVIV DNQASKTHTV 850 860 870 880 890 900 IEINGRDRPG FLYAVTRALT DVAVQISSAR VSTYGERVVD SFYVKDVFGM KIVHRAKLAQ 910 920 930 IREALEAAIT QTVPRKVEEG AEQGAEKADA GEIVAA

References

[1]

"Complete sequence of the chromosome of Rhodospirillum rubrum ATCC 11170." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M. , Kyrpides N., Mavrommatis K., Richardson P., Zhang Y., Roberts G., Reslewic S., Zhou S., Schwartz D.C. Submitted (DEC-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000230 Genomic DNA. Translation: ABC24333.1.
RefSeq	YP_428620.1. NC_007643.1.
3D structure databases
ProteinModelPortal	Q2RNG2.
ModBase	Search...
Protein-protein interaction databases
STRING	269796.Rru_A3539.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABC24333; ABC24333; Rru_A3539.
GeneID	3836994.
KEGG	rru:Rru_A3539.
PATRIC	23330876. VBIRhoRub82919_3656.
Phylogenomic databases
eggNOG	COG2844.
HOGENOM	HOG000261779.
KO	K00990.
OMA	SPKVWNA.
ProtClustDB	PRK05092.
Family and domain databases
Gene3D	1.10.3210.10. 1 hit.
HAMAP	MF_00277. PII_uridylyl-transf.
InterPro	IPR002912. ACT_dom. IPR010043. GlnD_Uridyltrans. IPR003607. HD/PDEase_dom. IPR006674. HD_domain. IPR002934. Nucleotidyltransferase. IPR013546. PII_UdlTrfase/GS_AdlTrfase. [Graphical view]
PANTHER	PTHR13734:SF1. PTHR13734:SF1. 1 hit.
Pfam	PF01842. ACT. 2 hits. PF08335. GlnD_UR_UTase. 1 hit. PF01966. HD. 1 hit. PF01909. NTP_transf_2. 1 hit. [Graphical view]
PIRSF	PIRSF006288. PII_uridyltransf. 1 hit.
SMART	SM00471. HDc. 1 hit. [Graphical view]
TIGRFAMs	TIGR01693. UTase_glnD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

GLND_RHORT

Accession

Primary (citable) accession number: Q2RNG2

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 4, 2006
Last sequence update:	January 24, 2006
Last modified:	May 1, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program