Q2R193 (Q2R193_ORYSJ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Retrotransposon protein, putative, Ty3-gypsy subclass EMBL ABA94813.1

Gene names

Ordered Locus Names:

LOC_Os11g39950 EMBL ABA94813.1

Organism

Oryza sativa subsp. japonica (Rice) EMBL ABA94813.1

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza › Oryza sativa

Protein attributes

Sequence length	1712 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 reverse transcriptase domain. RuleBase RU000322

Ontologies

Keywords
Domain	Zinc-finger RuleBase RU000338
Ligand	Metal-binding Zinc
Gene Ontology (GO)
Biological_process	DNA integration Inferred from electronic annotation. Source: InterPro RNA-dependent DNA replication Inferred from electronic annotation. Source: InterPro proteolysis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro RNA-directed DNA polymerase activity Inferred from electronic annotation. Source: InterPro aspartic-type endopeptidase activity Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q2R193 [UniParc]. Last modified January 24, 2006. Version 1. Checksum: 25D5430528B44DA5	FASTA	1,712	195,290
	10 20 30 40 50 60 MADSDSPATW ELSLPQSEGY VIVLHQMLRR LRYPGFPSYR VRQCGPVWEA RVEIHPRVPS 70 80 90 100 110 120 ELDYSFQTRH HRDLPETAMQ DAAREAFLRL SSIHRAELVS TEFAHHPFRE EGNSVCTVQN 130 140 150 160 170 180 TPCCYNPIVT RLSRWAEAVD DYYEEALLEI DDHQRRMGEL ETEVTDLTAQ QLQLEEEHQA 190 200 210 220 230 240 WGSEIDSLKA QLQVHGDQYQ QLSDQYNDRR GMMDTLEEQL RESQEHVSQL EEQLRAAKIS 250 260 270 280 290 300 TTGASTSTAA GRDRYFFLTP PYPPAFHALL GEASMLATES APYLVDPTAA QPPVPELVHT 310 320 330 340 350 360 PLVPTPSPQL GSGLETPIQI DSETEETDTE PEIEPDITDP SEDEAPVPRI TFLGGPRTLS 370 380 390 400 410 420 TARKSTRPPG KRPKPDPEAT TSEPWGLSFG EFMRTKPPTF ATAEEPMDAE DCLRVIEKKL 430 440 450 460 470 480 TLVRVREADK VIFAANQLEG PAGDWWDTYK EAREDGAGEP TWEEFTAAFR ENFVPAAVMR 490 500 510 520 530 540 MKKNEFRRLR QGNTTVQEYL NKFTQLARYA IGDLADEEEK IDKFIEGLND ELRGPMIGQD 550 560 570 580 590 600 HESFQSLINK VVRLENDQRT VEHNRKRRLA MSRPPQTVPQ RLKGATPSGW KPPVVVTNRP 610 620 630 640 650 660 AAPSNFNRPV ALQNRTPTPT LAAPGAKKNV DCFNCGEYGH YANNCPHPRK TPVRTGANAM 670 680 690 700 710 720 TVRGTTTPTV GRGLFKTPQS NRTTTGFGRG QVNHVRAEEA QEDQGVLMGM FSINSTPVKV 730 740 750 760 770 780 LFDSGASHSF ISLKASQKHN LTLVGLRKPM IVHSPGGEIT VSHACIDVPI LLRDVVFPSN 790 800 810 820 830 840 LMVLIPQTLD VILGMDWLAK HTGVIDCRRR EVTLTTPWGS DMRATMDQDP RLTERAGGIF 850 860 870 880 890 900 TMLPLKGMPV VQRFPDVFPE DLPGMPPDRD IEFIIDLIPG TTPISKRPYR MPVNELEELK 910 920 930 940 950 960 KQIRELQEKG FVRPSSSPWG APVLFVKKKD GSMRICVDYR SLNEVTIKNK YPLPRIDDLF 970 980 990 1000 1010 1020 DQLKGAKVFS TIDLRSGYHQ LKIRTEDIPK TAFSTRYGLY EFTVMSFGLT NAPAYFMNLM 1030 1040 1050 1060 1070 1080 NKVFMDYLDK FVVVFIDDIL IYSKDEEEHA EHLRLVLQKL RKHKLYKKFS KCEFWLKEVA 1090 1100 1110 1120 1130 1140 FLGHVISAGG VAVDPAKVEA VTEWKAPKSV TEIRSFLGLA GYYRRFIEGF SKIARPMTQL 1150 1160 1170 1180 1190 1200 LKKEKKFVWS EQCQESFEQL KEKLTSAPIL VLPDIRKDFV IYCDASRQGL GGVLMQDGKV 1210 1220 1230 1240 1250 1260 VAYASRQLRP HEENYPTHDL ELAAVVHALK IWRHYLIGNH CDIYTDHKSL KYIFTQSDLN 1270 1280 1290 1300 1310 1320 LRQRRWLELI KDYDLEVHYH PGKANVVADA LSRKSHYNHL RMEGMVPELR EEIAQLNLHI 1330 1340 1350 1360 1370 1380 VPHGRINTLD IQPLLRTQIE EAQKDNEEVR EVKERLAAGR AKEFSTDGKD VLWYKKRIYV 1390 1400 1410 1420 1430 1440 PEQGGLRGLI LKEAHESAYS LHPGSTKMYQ DLKEGYWWPN MKRDVAEYVA LCDVCQKVKA 1450 1460 1470 1480 1490 1500 EHQRPAGLLQ PLRIPEWKWD EIGMDFIVGL PKTATGYDSI WVIVDRLNKT ARFIPVKTNY 1510 1520 1530 1540 1550 1560 SSAKLAELYM TRIVCLHGIP KKIISDRGTQ FTSHFWEKVH EALGSYLAFS TAYHPQTDGQ 1570 1580 1590 1600 1610 1620 TERTNQTGER AVFGPDIIQE AEEKVRLIRD RLKVAQSRQK SYADTRRRNL EFKEGDYVYL 1630 1640 1650 1660 1670 1680 KVSPMRGTKR FKVKGKLAPR YVGPFQIIAR RGEVAYQLQL PEYIADVHPV FHVSQLKKCL 1690 1700 1710 RVPEEQAPLE EIHISNDLTY PEHPIRILDE AD

References

[1]	"The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications." The rice chromosomes 11 and 12 sequencing consortia BMC Biol. 3:20-20(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.

Cross-references

Sequence databases
EMBL GenBank DDBJ	DP000010 Genomic DNA. Translation: ABA94813.1.
3D structure databases
ProteinModelPortal	Q2R193.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Organism-specific databases
Gramene	Q2R193.
Phylogenomic databases
eggNOG	COG2801.
HOGENOM	HOG000078643.
Family and domain databases
Gene3D	4.10.60.10. 1 hit.
InterPro	IPR001584. Integrase_cat-core. IPR021109. Peptidase_aspartic. IPR001969. Peptidase_aspartic_AS. IPR005162. Retrotrans_gag. IPR012337. RNaseH-like_dom. IPR013242. RVP_2. IPR000477. RVT. IPR001878. Znf_CCHC. [Graphical view]
Pfam	PF03732. Retrotrans_gag. 1 hit. PF00665. rve. 1 hit. PF08284. RVP_2. 1 hit. PF00078. RVT_1. 1 hit. PF00098. zf-CCHC. 1 hit. [Graphical view]
SMART	SM00343. ZnF_C2HC. 1 hit. [Graphical view]
SUPFAM	SSF50630. Pept_Aspartic. 1 hit. SSF53098. RNaseH_fold. 1 hit. SSF57756. SSF57756. 1 hit.
PROSITE	PS00141. ASP_PROTEASE. 1 hit. PS50994. INTEGRASE. 1 hit. PS50878. RT_POL. 1 hit. PS50158. ZF_CCHC. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q2R193_ORYSJ

Accession

Primary (citable) accession number: Q2R193

Entry history

Integrated into UniProtKB/TrEMBL:	January 24, 2006
Last sequence update:	January 24, 2006
Last modified:	April 3, 2013
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)