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Q2R0L0

- LAC20_ORYSJ

UniProt

Q2R0L0 - LAC20_ORYSJ

Protein

Laccase-20

Gene

LAC20

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 68 (01 Oct 2014)
      Sequence version 1 (24 Jan 2006)
      Previous versions | rss
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    Functioni

    Lignin degradation and detoxification of lignin-derived products.By similarity

    Catalytic activityi

    4 benzenediol + O2 = 4 benzosemiquinone + 2 H2O.

    Cofactori

    Binds 4 copper ions per monomer.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi81 – 811Copper 1By similarity
    Metal bindingi83 – 831Copper 2By similarity
    Metal bindingi126 – 1261Copper 2By similarity
    Metal bindingi128 – 1281Copper 3By similarity
    Metal bindingi478 – 4781Copper 4Sequence Analysis
    Metal bindingi481 – 4811Copper 1By similarity
    Metal bindingi483 – 4831Copper 3By similarity
    Metal bindingi540 – 5401Copper 3By similarity
    Metal bindingi541 – 5411Copper 4Sequence Analysis
    Metal bindingi542 – 5421Copper 2By similarity
    Metal bindingi546 – 5461Copper 4Sequence Analysis
    Metal bindingi551 – 5511Copper 4Sequence Analysis

    GO - Molecular functioni

    1. copper ion binding Source: InterPro
    2. hydroquinone:oxygen oxidoreductase activity Source: UniProtKB-EC

    GO - Biological processi

    1. lignin catabolic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    Oxidoreductase

    Keywords - Biological processi

    Lignin degradation

    Keywords - Ligandi

    Copper, Metal-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Laccase-20 (EC:1.10.3.2)
    Alternative name(s):
    Benzenediol:oxygen oxidoreductase 20
    Diphenol oxidase 20
    Urishiol oxidase 20
    Gene namesi
    Name:LAC20
    Ordered Locus Names:Os11g0641800, LOC_Os11g42220
    ORF Names:OsJ_033255
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 11

    Organism-specific databases

    GrameneiQ2R0L0.

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Apoplast, Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2323Sequence AnalysisAdd
    BLAST
    Chaini24 – 580557Laccase-20PRO_0000291907Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi36 – 361N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi42 – 421N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi115 – 1151N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi200 – 2001N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi339 – 3391N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi373 – 3731N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi392 – 3921N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi399 – 3991N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi429 – 4291N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi460 – 4601N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Proteomic databases

    PRIDEiQ2R0L0.

    Structurei

    3D structure databases

    ProteinModelPortaliQ2R0L0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini31 – 147117Plastocyanin-like 1Add
    BLAST
    Domaini156 – 310155Plastocyanin-like 2Add
    BLAST
    Domaini419 – 561143Plastocyanin-like 3Add
    BLAST

    Sequence similaritiesi

    Belongs to the multicopper oxidase family.Curated
    Contains 3 plastocyanin-like domains.Curated

    Keywords - Domaini

    Repeat, Signal

    Phylogenomic databases

    eggNOGiCOG2132.
    OMAiATIFCAV.

    Family and domain databases

    Gene3Di2.60.40.420. 4 hits.
    InterProiIPR001117. Cu-oxidase.
    IPR011706. Cu-oxidase_2.
    IPR011707. Cu-oxidase_3.
    IPR002355. Cu_oxidase_Cu_BS.
    IPR008972. Cupredoxin.
    [Graphical view]
    PfamiPF00394. Cu-oxidase. 1 hit.
    PF07731. Cu-oxidase_2. 1 hit.
    PF07732. Cu-oxidase_3. 1 hit.
    [Graphical view]
    SUPFAMiSSF49503. SSF49503. 3 hits.
    PROSITEiPS00079. MULTICOPPER_OXIDASE1. 1 hit.
    PS00080. MULTICOPPER_OXIDASE2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q2R0L0-1 [UniParc]FASTAAdd to Basket

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    MVASLLCTVA VAVLAVAAVG GEAGVVEHTF VVHEMNVTHL CNTTKIFVVN    50
    GQLPGPTVDV TEGDTVVIHV VNKIPHGLTI HWHGVRQLRS CWADGAGFIT 100
    ECPIPPGSER TYRFNVTDQV GTLWWHAHVT CLRSTINGAF IIRPRDGKYP 150
    FPTPVKDVPI IIGEWWELDL VELDRRMRDG NFDDNPLSAT INGKLGDLSN 200
    CSGIVEESFV LNVKHGESYL LRVINTAFFS EYYFKVAGHT FTVVGADGNY 250
    LTPFKTDMVT VAPGEAIDVL MVADAPPAHY HMIALANQPP EPDPQIPKYI 300
    SRGLVRYTGV DANNNGLPVP MPIMPNQHNT MPSYYFHANL TGLMHPKHRR 350
    VPMHVDERIF IILGLGTICR GRNTTCKRQR SLETIEVATM NNVSFTHPNT 400
    TALLERYYDG TPEGVYTEDF PVRPPRPYNY TNPALIPPGP LEEVLEPTFK 450
    ATKLKRFKYN TSVEIIFQSS TLLMSDSNPM HLHGYDVFLL AQGLGSFNAK 500
    RDIRKFNYHN PQLRNTILVP RGGWAAVRFI TDNPGMWYLH CHFEFHIIMG 550
    MATAFIVEDG PTPETSLPPP PPEFKRCDAS 580
    Length:580
    Mass (Da):64,761
    Last modified:January 24, 2006 - v1
    Checksum:iA32648EE21FCA3E0
    GO

    Sequence cautioni

    The sequence BAF28717.2 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DP000010 Genomic DNA. Translation: ABA95019.1.
    AP008217 Genomic DNA. Translation: BAF28717.2. Different initiation.
    CM000148 Genomic DNA. Translation: EAZ19046.1.
    AK066963 mRNA. Translation: BAG90203.1.
    RefSeqiNP_001068354.2. NM_001074886.1.
    UniGeneiOs.8440.

    Genome annotation databases

    EnsemblPlantsiOS11T0641800-01; OS11T0641800-01; OS11G0641800.
    GeneIDi4351006.
    KEGGiosa:4351006.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DP000010 Genomic DNA. Translation: ABA95019.1 .
    AP008217 Genomic DNA. Translation: BAF28717.2 . Different initiation.
    CM000148 Genomic DNA. Translation: EAZ19046.1 .
    AK066963 mRNA. Translation: BAG90203.1 .
    RefSeqi NP_001068354.2. NM_001074886.1.
    UniGenei Os.8440.

    3D structure databases

    ProteinModelPortali Q2R0L0.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q2R0L0.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS11T0641800-01 ; OS11T0641800-01 ; OS11G0641800 .
    GeneIDi 4351006.
    KEGGi osa:4351006.

    Organism-specific databases

    Gramenei Q2R0L0.

    Phylogenomic databases

    eggNOGi COG2132.
    OMAi ATIFCAV.

    Family and domain databases

    Gene3Di 2.60.40.420. 4 hits.
    InterProi IPR001117. Cu-oxidase.
    IPR011706. Cu-oxidase_2.
    IPR011707. Cu-oxidase_3.
    IPR002355. Cu_oxidase_Cu_BS.
    IPR008972. Cupredoxin.
    [Graphical view ]
    Pfami PF00394. Cu-oxidase. 1 hit.
    PF07731. Cu-oxidase_2. 1 hit.
    PF07732. Cu-oxidase_3. 1 hit.
    [Graphical view ]
    SUPFAMi SSF49503. SSF49503. 3 hits.
    PROSITEi PS00079. MULTICOPPER_OXIDASE1. 1 hit.
    PS00080. MULTICOPPER_OXIDASE2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications."
      The rice chromosomes 11 and 12 sequencing consortia
      BMC Biol. 3:20-20(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    4. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiLAC20_ORYSJ
    AccessioniPrimary (citable) accession number: Q2R0L0
    Secondary accession number(s): B7ECV6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 26, 2007
    Last sequence update: January 24, 2006
    Last modified: October 1, 2014
    This is version 68 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3