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Protein
Submitted name:

60S ribosomal protein L26-1, putative, expressed

Gene

LOC_Os12g05430

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinImported

Enzyme and pathway databases

ReactomeiR-OSA-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-OSA-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-OSA-72689. Formation of a pool of free 40S subunits.
R-OSA-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-OSA-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-OSA-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Submitted name:
60S ribosomal protein L26-1, putative, expressedImported
Submitted name:
Os12g0150100 proteinImported
Submitted name:
Uncharacterized proteinImported
Submitted name:
cDNA clone:001-045-F01, full insert sequenceImported
Gene namesi
Ordered Locus Names:LOC_Os12g05430Imported, Os12g0150100Imported
ORF Names:OsJ_35234Imported, OSNPB_120150100Imported
OrganismiOryza sativa subsp. japonica (Rice)Imported
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 12

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os12g05430.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini48 – 75KOWInterPro annotationAdd BLAST28

Phylogenomic databases

eggNOGiKOG3401. Eukaryota.
COG0198. LUCA.
KOiK02898.
OMAiCYRKKFV.
OrthoDBiEOG09360SM0.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
HAMAPiMF_01326_A. Ribosomal_L24_A. 1 hit.
InterProiIPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR005825. Ribosomal_L24/26_CS.
IPR005756. Ribosomal_L26/L24P_euk/arc.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR11143. PTHR11143. 1 hit.
PfamiPF00467. KOW. 1 hit.
PF16906. Ribosomal_L26. 1 hit.
[Graphical view]
SMARTiSM00739. KOW. 1 hit.
[Graphical view]
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01080. rplX_A_E. 1 hit.
PROSITEiPS01108. RIBOSOMAL_L24. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2QXN5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRNPRVTSS RRKCRKAHFT APSSVRRVLM SAALSTELRH KYNVRSIPIR
60 70 80 90 100
KDDEVQVVRG SYKGREGKVV QVYRRRWVIH VERITREKVN GSTVNVGIHP
110 120 130 140 150
SKVVVTKLKL DKDRKAILDR KASGRAADKA KGKFTAEDVA AAGASLQEID
Length:150
Mass (Da):16,931
Last modified:January 24, 2006 - v1
Checksum:i54F6E96AF9B5F8C4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DP000011 Genomic DNA. Translation: ABA95811.1.
AP008218 Genomic DNA. Translation: BAF29184.1.
AK105075 mRNA. Translation: BAG97089.1.
AP014968 Genomic DNA. Translation: BAT15909.1.
CM000149 Genomic DNA. Translation: EAZ19657.1.
RefSeqiXP_015618223.1. XM_015762737.1.
UniGeneiOs.9317.

Genome annotation databases

EnsemblPlantsiOS12T0150100-01; OS12T0150100-01; OS12G0150100.
GeneIDi4351513.
GrameneiOS12T0150100-01; OS12T0150100-01; OS12G0150100.
KEGGiosa:4351513.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DP000011 Genomic DNA. Translation: ABA95811.1.
AP008218 Genomic DNA. Translation: BAF29184.1.
AK105075 mRNA. Translation: BAG97089.1.
AP014968 Genomic DNA. Translation: BAT15909.1.
CM000149 Genomic DNA. Translation: EAZ19657.1.
RefSeqiXP_015618223.1. XM_015762737.1.
UniGeneiOs.9317.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os12g05430.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS12T0150100-01; OS12T0150100-01; OS12G0150100.
GeneIDi4351513.
GrameneiOS12T0150100-01; OS12T0150100-01; OS12G0150100.
KEGGiosa:4351513.

Phylogenomic databases

eggNOGiKOG3401. Eukaryota.
COG0198. LUCA.
KOiK02898.
OMAiCYRKKFV.
OrthoDBiEOG09360SM0.

Enzyme and pathway databases

ReactomeiR-OSA-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-OSA-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-OSA-72689. Formation of a pool of free 40S subunits.
R-OSA-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-OSA-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-OSA-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
HAMAPiMF_01326_A. Ribosomal_L24_A. 1 hit.
InterProiIPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR005825. Ribosomal_L24/26_CS.
IPR005756. Ribosomal_L26/L24P_euk/arc.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR11143. PTHR11143. 1 hit.
PfamiPF00467. KOW. 1 hit.
PF16906. Ribosomal_L26. 1 hit.
[Graphical view]
SMARTiSM00739. KOW. 1 hit.
[Graphical view]
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01080. rplX_A_E. 1 hit.
PROSITEiPS01108. RIBOSOMAL_L24. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ2QXN5_ORYSJ
AccessioniPrimary (citable) accession number: Q2QXN5
Entry historyi
Integrated into UniProtKB/TrEMBL: January 24, 2006
Last sequence update: January 24, 2006
Last modified: November 30, 2016
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.