Q2QW55 (MAD33_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
MADS-box transcription factor 33

Alternative name(s):
OsMADS33

Gene names

Name:	MADS33
Ordered Locus Names:	Os12g0206800, LOC_Os12g10520

Organism

Oryza sativa subsp. japonica (Rice) [Reference proteome]

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza › Oryza sativa

Protein attributes

Sequence length	202 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	Probable transcription factor.
Subcellular location	Nucleus Probable.
Tissue specificity	Expressed in seedling roots. Ref.1
Sequence similarities	Contains 1 K-box domain. Contains 1 MADS-box domain.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Ligand	DNA-binding
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	root development Inferred from electronic annotation. Source: EnsemblPlants/Gramene transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW vegetative to reproductive phase transition of meristem Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Cellular_component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 202	202	MADS-box transcription factor 33		PRO_0000229913
Regions
	Domain	1 – 61	61	MADS-box
	Domain	87 – 177	91	K-box

Sequences

	Sequence		Length	Mass (Da)
	Q2QW55 [UniParc]. Last modified April 4, 2006. Version 2. Checksum: C4C9E0EB95431D39	FASTA	202	23,233
	10 20 30 40 50 60 MVRGKVQMRR IENPVHRQVT FCKRRGGLLK KARELSVLCD ADVGVIIFSS QGKLHELATN 70 80 90 100 110 120 GNMHNLVERY QSNVAGGQME PGALQRQQVA EQGIFLLREE IDLLQRGLRS TYGGGAGEMT 130 140 150 160 170 180 LDKLHALEKG LELWIYQIRT TKMQMMQQEI QFLRNKEGIL KEANEMLQEK VKEQQKLYMS 190 200 LLDLHSQQPT QPMTYGNRFF SI

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Systematic reverse genetic screening of T-DNA tagged genes in rice for functional genomic analyses: MADS-box genes as a test case." Lee S., Kim J., Son J.-S., Nam J., Jeong D.-H., Lee K., Jang S., Yoo J., Lee J., Lee D.-Y., Kang H.-G., An G. Plant Cell Physiol. 44:1403-1411(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY. Strain: cv. Dongjin.
[2]	"The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications." The rice chromosomes 11 and 12 sequencing consortia BMC Biol. 3:20-20(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AY177700 mRNA. Translation: AAO47710.1. DP000011 Genomic DNA. Translation: ABA96134.2.
RefSeq	NP_001066384.1. NM_001072916.1.
UniGene	Os.48782.
3D structure databases
ProteinModelPortal	Q2QW55.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	LOC_Os12g10520.1; LOC_Os12g10520.1; LOC_Os12g10520.
GeneID	4351752.
KEGG	dosa:Os12t0206800-00. osa:4351752.
Organism-specific databases
Gramene	Q2QW55.
Phylogenomic databases
eggNOG	COG5068.
HOGENOM	HOG000155301.
OMA	HELATNG.
ProtClustDB	CLSN2689145.
Gene expression databases
ArrayExpress	Q2QW55.
Family and domain databases
InterPro	IPR002487. TF_Kbox. IPR002100. TF_MADSbox. [Graphical view]
Pfam	PF01486. K-box. 1 hit. PF00319. SRF-TF. 1 hit. [Graphical view]
PRINTS	PR00404. MADSDOMAIN.
SMART	SM00432. MADS. 1 hit. [Graphical view]
SUPFAM	SSF55455. TF_MADSbox. 1 hit.
PROSITE	PS51297. K_BOX. 1 hit. PS00350. MADS_BOX_1. 1 hit. PS50066. MADS_BOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

MAD33_ORYSJ

Accession

Primary (citable) accession number: Q2QW55
Secondary accession number(s): Q84NC1

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 4, 2006
Last sequence update:	April 4, 2006
Last modified:	April 3, 2013
This is version 46 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program